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The map label for this gene is fliD [H]

Identifier: 78047577

GI number: 78047577

Start: 2301113

End: 2302438

Strand: Reverse

Name: fliD [H]

Synonym: XCV2021

Alternate gene names: 78047577

Gene position: 2302438-2301113 (Counterclockwise)

Preceding gene: 78047578

Following gene: 78047576

Centisome position: 44.46

GC content: 64.86

Gene sequence:

>1326_bases
ATGGCATCGGTGATCAGCACTTCCGCCTCCGGATTGGACATCCCTACCGTGGTGTCCACCCTGGTGTCCCGGCAGAAAGA
CCCCGAGCAGGCACGCATCAACAAGGCCGGCACCGCCGCGACCACGCAGTTGTCGGCGATCAGCCAGATCAAGAGCAGCA
TGACCACGCTCAAGTCTGCGCTGGACAAGGTGATCAGCAGCGCCGACACCAACGCCTACAAGGCCACGGTGCCGACCGAT
GCCGGCTTCACCGCCACCACCACCAGCTCGGCGGCGCCGGGCAACTATTCGGTGGAAGTGGTCTCGCTGGCGACCTCGCA
GAAACTGGCCTCCGGTGCATTCGCTGCCGATGCCACCGTGGGTAGCGGCACGCTGACGATCGGCTATGGCGATCAGAGCG
TCACCGTGGACATCAGCGGCACCGACAAGCTCACCGACATCGCTGCAGCCATCAACAAGGCCGCCGGCGGCAAGGGCGTG
ACTGCCAGCGTGGTCACCGCCAACGATGGCCAGCACCTGGTCTTCAATGCGGTCGACTCCGGTACCAAGGGCGCCCTGAC
CATCAGCGCCAGCGACCCCAGCCTGAGCAGCCTCACCTACGGCCCCGGCGTCACCGGCGGGCTGAACCAGACCGTCGCTG
CCGCCGACGCGCTGGTACGCGTGGACGGTTTCGAGCGCACGTCCAGCTCCAACACCGTCAGCGACATCGTGCCCGGCGTG
GTGCTCACCCTGACCAAGGCCGCTGAAGGCACCAAGTTCAATCTGGGCGTGGCCGCCGACACCAGCGGCCTCAAGGGCAA
CCTCACCGCGTTCGCCGCGGCCTACAACACCGCCAACACGCTGCTGGCCAAGAGCAGCAGTTACGACGCCACCACCAAGA
CTGCCTCGGCGCTGACCGGCGATTCGCTGGTGCGCAGCCTGCAACAACAGCTGCGCGGCCAGGTCAGCGGCAACGTCAAC
GAACTCAAGGCGCTCGGCCTGACCATCGACAAGGATGGCGTGATGAGTTTCGACGGCGCCAAGTTCGACACCGCCATCGC
CTCCGACGGCGGCGCCGCGGCCGAGGTGTTGGGCAAGGACAGCAAATTCGGTGGCAACCTGACCAAGCTGCTGGACAGCA
ACGTCAATGCAACCAACGGCACGCTGACCCTGCGCTCGGACAGTTTGAACAAGACCATCAAGGGCTATGAATCGGAGCTG
GACGATCTCGATGCGCGCATGGAAAAACTCAGCGACCGCTACACCGCGCAGTTCGCCGCGATGGACGCCATGATCAGCAA
GTTGCAAGGCAGCACCAGCTCGCTCAGCGGCCTGCTGACAAGCTGA

Upstream 100 bases:

>100_bases
GTGACCCTCGCCGCCGCTAAAGTCCTAGCGGATGCGGCCGATACCCGTCACGTAATCCCATGCGTCCGTCTGTTTCGGAC
GCCCAGACGAGGAATGCAAC

Downstream 100 bases:

>100_bases
TTTCCGTGATGACGATCCTCAAGTCCTGTCAGGGTATTGCCGATACAAGTAAGGCCTATCGTGATTTCGGCCTTGCCTTC
CGGCAGGAGCGTCGTCGCAG

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MASVISTSASGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVISSADTNAYKATVPTD
AGFTATTTSSAAPGNYSVEVVSLATSQKLASGAFAADATVGSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGV
TASVVTANDGQHLVFNAVDSGTKGALTISASDPSLSSLTYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDIVPGV
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTGDSLVRSLQQQLRGQVSGNVN
ELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVLGKDSKFGGNLTKLLDSNVNATNGTLTLRSDSLNKTIKGYESEL
DDLDARMEKLSDRYTAQFAAMDAMISKLQGSTSSLSGLLTS

Sequences:

>Translated_441_residues
MASVISTSASGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVISSADTNAYKATVPTD
AGFTATTTSSAAPGNYSVEVVSLATSQKLASGAFAADATVGSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGV
TASVVTANDGQHLVFNAVDSGTKGALTISASDPSLSSLTYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDIVPGV
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTGDSLVRSLQQQLRGQVSGNVN
ELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVLGKDSKFGGNLTKLLDSNVNATNGTLTLRSDSLNKTIKGYESEL
DDLDARMEKLSDRYTAQFAAMDAMISKLQGSTSSLSGLLTS
>Mature_440_residues
ASVISTSASGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVISSADTNAYKATVPTDA
GFTATTTSSAAPGNYSVEVVSLATSQKLASGAFAADATVGSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGVT
ASVVTANDGQHLVFNAVDSGTKGALTISASDPSLSSLTYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDIVPGVV
LTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTGDSLVRSLQQQLRGQVSGNVNE
LKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVLGKDSKFGGNLTKLLDSNVNATNGTLTLRSDSLNKTIKGYESELD
DLDARMEKLSDRYTAQFAAMDAMISKLQGSTSSLSGLLTS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=472, Percent_Identity=30.0847457627119, Blast_Score=115, Evalue=6e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 44515; Mature: 44384

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVISTSASGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSA
CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LDKVISSADTNAYKATVPTDAGFTATTTSSAAPGNYSVEVVSLATSQKLASGAFAADATV
HHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCC
GSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGVTASVVTANDGQHLVFNAVDS
CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCC
GTKGALTISASDPSLSSLTYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDIVPGV
CCCCEEEEECCCCCCCCEECCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHCCH
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTG
HEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEHHCCHHHHEECCCCCCCCHHHHHHHHH
DSLVRSLQQQLRGQVSGNVNELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVLGKD
HHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCEECCCCCCCCEECCCCCHHHHHHCCC
SKFGGNLTKLLDSNVNATNGTLTLRSDSLNKTIKGYESELDDLDARMEKLSDRYTAQFAA
CCCCCHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MDAMISKLQGSTSSLSGLLTS
HHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
ASVISTSASGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSA
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LDKVISSADTNAYKATVPTDAGFTATTTSSAAPGNYSVEVVSLATSQKLASGAFAADATV
HHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCC
GSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGVTASVVTANDGQHLVFNAVDS
CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCC
GTKGALTISASDPSLSSLTYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDIVPGV
CCCCEEEEECCCCCCCCEECCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHCCH
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTG
HEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEHHCCHHHHEECCCCCCCCHHHHHHHHH
DSLVRSLQQQLRGQVSGNVNELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVLGKD
HHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCEECCCCCCCCEECCCCCHHHHHHCCC
SKFGGNLTKLLDSNVNATNGTLTLRSDSLNKTIKGYESELDDLDARMEKLSDRYTAQFAA
CCCCCHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MDAMISKLQGSTSSLSGLLTS
HHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10678962; 10984043 [H]