Click here to switch to the map view.

The map label for this gene is motB1 [H]

Identifier: 78047517

GI number: 78047517

Start: 2234864

End: 2235838

Strand: Reverse

Name: motB1 [H]

Synonym: XCV1961

Alternate gene names: 78047517

Gene position: 2235838-2234864 (Counterclockwise)

Preceding gene: 78047518

Following gene: 78047516

Centisome position: 43.18

GC content: 64.72

Gene sequence:

>975_bases
ATGGCCCGTCGTCGCAAACACCACGAAGAACATGGCAACCACGAAGCGTGGGCGATTCCGTATGCCGATCTGATGACGCT
GCTGCTGGCGTTCTTCGTGGTGATGTACGCCATCTCTTCGCTCAACGAAGGCAAATACAAGGTCATGGCGCAAGCGCTGA
CCAGCGCCTTCGGTGGCTCGTCGAACAAGGCCAGCCCGGTGCAGCTGGGCAAGACCCAGACCCTGGGCGCCGATTACGAC
CGCCCATCCGTGATCAAGGCCGGCGCGCCGATGGCGGCTTCCAATGGCCCGACCGACCCCACCCTGCTGCCGTCGATGGC
CGCGCAGATGCGCATGCCGGTGTCGCTGCGCAACCAGGCGCAACTGGCGCGCGCACAGCGGCAGATGGATGCAGTGGAGC
AACAGCTGAGCAAGACGCTGGCCCCGCTGATCGACAAGCAACTGATCACCATCCGCCGCAACGATCTGTGGATCGAGGTG
GAGATCAACAGCGACATCCTGTTCGGCACCGGCTCGGCCACCCTGGCCGGCGGCGCCCGCGGGACGTTGTCCACGCTGGC
CTCGGTGCTGCGCGATGCGCCCAATGGCGTGCGCGTGGAGGGCTATACCGATAACCAGCCCATCGCCACTGCGCAATTCC
CCTCCAACTGGGAGCTGTCTGCGGCGCGTGCGGCAAGCGTGGTGCACCTGTTCGCCGACGACGGCATCGCCCCGCAACGA
TTGGCGATGGTGGGCTATGGAGAATTCCGCGCACGTGCCGATAACAGCACTGAGGCGGGACGGAATGCGAACCGGCGTGT
GGTGTTGATCATCCTCGCTGACTCGGCTGGCTCACTCGCACCCGATCCGCCATCGCAATTAAATGCGACCGCCGCCGGGG
CGCCCAAGCTTCCCAAGTCTGACGGCGGCCAAACGGCCGTCACCACCGAAAGCGGCACAAGTTCCGTCCCCGCCGTAATT
CAAGGAGTGCAGTGA

Upstream 100 bases:

>100_bases
TGAGCGCGAAATGGCGATCGAAGGCCTGATCGCCATCGCCCAGGGCGAGAACCCGCGCAACATCGAATCGAAATTGGCAG
GCTACTTGCATTAGCGCGTT

Downstream 100 bases:

>100_bases
CATGCGTATCTGGGCAATCGCCAACCAAAAGGGCGGCGTCGGCAAGACCACCACGACGCTGGCATTGGGTCGCGGCCTGG
CCGCGCTCGGCCACCGCGTC

Product: flagellar motor protein MotD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQTLGADYD
RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEV
EINSDILFGTGSATLAGGARGTLSTLASVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQR
LAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVI
QGVQ

Sequences:

>Translated_324_residues
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQTLGADYD
RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEV
EINSDILFGTGSATLAGGARGTLSTLASVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQR
LAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVI
QGVQ
>Mature_323_residues
ARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQTLGADYDR
PSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVE
INSDILFGTGSATLAGGARGTLSTLASVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRL
AMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQ
GVQ

Specific function: May be involved in some transport function [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=288, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 34286; Mature: 34155

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGS
CCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
SNKASPVQLGKTQTLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQA
CCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
QLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGGAR
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCEEEEECCCCEECCCCC
GTLSTLASVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQR
HHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHEEEEECCCCCCHHH
LAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKS
EEEECCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCC
DGGQTAVTTESGTSSVPAVIQGVQ
CCCCEEEEECCCCCCCHHHHCCCC
>Mature Secondary Structure 
ARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGS
CCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
SNKASPVQLGKTQTLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQA
CCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
QLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGGAR
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCEEEEECCCCEECCCCC
GTLSTLASVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQR
HHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHEEEEECCCCCCHHH
LAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKS
EEEECCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCC
DGGQTAVTTESGTSSVPAVIQGVQ
CCCCEEEEECCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934817; 9387221; 9384377 [H]