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The map label for this gene is yagA [C]

Identifier: 78047402

GI number: 78047402

Start: 2082028

End: 2082771

Strand: Reverse

Name: yagA [C]

Synonym: XCV1846

Alternate gene names: 78047402

Gene position: 2082771-2082028 (Counterclockwise)

Preceding gene: 78047403

Following gene: 78047398

Centisome position: 40.22

GC content: 57.93

Gene sequence:

>744_bases
ATGCGCTATCAACGTCGTCCCGATCGGGATGATGAGGTTATTGCGCTGTTGTCCGAATTGGCCGAGCGTTTTCCTGAGCG
TGGATTTGGAAAACTTTTTCAAATCATCCGCCGTCGCGGACATGTGTGGAACCACAAGAGGGTCTGGCGCGTGTATTGCC
TGATGAAGCTCAATCAACGTCGTCGCAGCAGGCGCCGGGTACCGACGCGTCATCCACAGCCGCTGGCATGCGGTGATCGA
CCCAATGCTGGATGGTCGATCGACTTCATGTCCGATGCGTTATGGGACGGTCGGCGTTTTCGCACGTTCAATGTCATCGA
CGATTTCAGTCGGGAAGCCTTGGCGATCGAAGTGGACCTGAATCTTCCGGCCGCCCGCGTCATTCGCACGTTGGAACGCA
TCGCAGCTTGGCGCGGCTATCCGAACAAGCTGCGTTTGGACAACGGGCCGGAATTTGTCGCGCTGGCCTTGTCCGAGTGG
GCCGAGCGTAAGGGCATCGCCTTGGACTTCATTGAACCGGGGCGTCCGATGCAGAACGGTTTTATCGAACGCTTCAACGG
CAGCTACAGGCGCGGCGTGCTGGACATGCATCTCTTCCGCACGCTGAGCGAGGTCCGCGAACAGACCGAACACTGGCTTG
CCGACTACAACCAACAGATCCCGCACGACAGCCTGGGCGGACTAACGCCCGCTGAGTTCCGTGATCAACATCAACCGCAG
ACCTCTAGTTTTAGCTGGCATTGA

Upstream 100 bases:

>100_bases
AGACCCGGCGCACAAGCGCCCGCTTCTGGCCTGGCTCATCGAGCAGCATGGCTGGAGCGAGCGCCGGGCCTGTTCGGTGG
TTGGCGTGGCGCGCTCGACG

Downstream 100 bases:

>100_bases
ATTGCGGGGAGTCGACACTTGCTTGGTGGCTGATGCTAGCGGTCATGATAAATTCACATCAGTGACTAAACAAAAATTTT
ATCACCGCCTCCATAATTAA

Product: ISxcC1 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQRRRSRRRVPTRHPQPLACGDR
PNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALSEW
AERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHLFRTLSEVREQTEHWLADYNQQIPHDSLGGLTPAEFRDQHQPQ
TSSFSWH

Sequences:

>Translated_247_residues
MRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQRRRSRRRVPTRHPQPLACGDR
PNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALSEW
AERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHLFRTLSEVREQTEHWLADYNQQIPHDSLGGLTPAEFRDQHQPQ
TSSFSWH
>Mature_247_residues
MRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQRRRSRRRVPTRHPQPLACGDR
PNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALSEW
AERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHLFRTLSEVREQTEHWLADYNQQIPHDSLGGLTPAEFRDQHQPQ
TSSFSWH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 29293; Mature: 29293

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQR
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RRSRRRVPTRHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDL
HHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCEEEEHHHHHCCCCEEEEEEEC
NLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALSEWAERKGIALDFIEPGRPMQNG
CCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHH
FIERFNGSYRRGVLDMHLFRTLSEVREQTEHWLADYNQQIPHDSLGGLTPAEFRDQHQPQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCC
TSSFSWH
CCCCCCC
>Mature Secondary Structure
MRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQR
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RRSRRRVPTRHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDL
HHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCEEEEHHHHHCCCCEEEEEEEC
NLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALSEWAERKGIALDFIEPGRPMQNG
CCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHH
FIERFNGSYRRGVLDMHLFRTLSEVREQTEHWLADYNQQIPHDSLGGLTPAEFRDQHQPQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCC
TSSFSWH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]