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The map label for this gene is 78046918

Identifier: 78046918

GI number: 78046918

Start: 1539091

End: 1540476

Strand: Reverse

Name: 78046918

Synonym: XCV1362

Alternate gene names: NA

Gene position: 1540476-1539091 (Counterclockwise)

Preceding gene: 78046925

Following gene: 78046917

Centisome position: 29.75

GC content: 68.69

Gene sequence:

>1386_bases
ATGCCCCAGTCGCACGCTCAACTCCGCCACCAGCTTGGGCTGCGCCTGCAGCGGCTGCGCCAGCGCCATGGCCTGACCCA
GGCCGAGCTGGCGCGCCGGCTCGAGCTGTCGCCGAGCTATCTCAACCAGATCGAGCGCAATCAGCGCCCGCTCACCCTGG
CCATCCAGCAGCGGCTCAAGAGCGCGCTGGGCGACCTGGACGGCCTGCTGGACCTGGACGACCCGGCCGCACTGGTCGAG
CCGCTGGACGCATCGCTGCGCAGCCTGGGCCATACGCTGTTGCCGGCCGAGCTGCGTGCGCTGACCGGCAATCTGCCGCA
GGTAGCGCAGGCGCTGCTGGACCTGCACCGCGCCCATCAGCATCTGCTCGAACGCAACGCAGCGCTGGAGCTGCAGATCG
GGGTCGAGCACGCGGCAATCCCATCGCTATCGCCCGGCGAGCAGGTGCGCGACTACTTCAACCGCGCGCACAACTATCTG
CCGGAACTGGACGAGCGCGCCGAAGCGCTTTACGCCGAACTTGGGTTGACCCCGGAAAATCTGCCGCTGCGGCTGCGCCA
ACGCCTCGCCGATCGCCACGGCCTGCTGGTGCAGGACGCTCCCGACCTGCACAGCGACAAACGCAGCATGGATGCGCAAG
CCCGTGTGCTGTGTCTGCCGGCGCACTTGCGGCCGGGCCAGCAGGCATTTCAGATGGCCGCACAGCTGGCCTTGCTGGAA
TGCGCGCCGCTGCTGGACGCGCGCATTGCCGATGCCGGTTTCGAGGACGCCGAGCGCATCGCGCTGTCGCGGATTGGCCT
GTCGAACTATTTCGCCGGCGCGCTGGTGATGCCCTACAGCGCTTTCCTGCACAGCGCGCAAACCTCGCGCTACGACATCG
AATGGTTGGCCGACCGCTTCGAGGTGGGCTTCGAAGCGGTGTGTCACCGGCTCAGCACCTTGCAGCGGCGCGGGGCAGCC
GGTCTGCCGATCTTCTTCCTGCGGGTGGACCGCGCCGGCAATGTCTCCAAGCGCCACTCGGCCACCGATTTCCATTTCTC
GCATGTCGGCGGCGCCTGCCCGCTGTGGATCGTGTACGAGGCGTTCAACCAGCCTGACCGCATCCTCACCCAGATCGCGC
GCATGCCCGACGGCCGGCGCTATTTCTGGCTGGCCCGCCAGGTCAGCAGCGGCCCGCCCGGGTATGGCCGCCCGCGCAAG
ACCTTTGCCCTGGCAATGGGCTGCGACCTGCGCCACGCCGATCAGTTGGTGTATGCGCGGGGTTGGGATCTGAACGCGGT
CGACGATGCGGTACCGATCGGCCCGGGCTGCCTGACCTGCGAACGCAGCGACTGCGTGCAGCGCGCGTTTCCTGCGCTGC
CGCGCCTGCCGGCGCGCGCGCGTTAG

Upstream 100 bases:

>100_bases
CAGGCCAATACTTCGCATTGTTTGCATCGACACCCTCCATTCCCAGCCCGCTATTGCTTAATCGCGCTAAGCTGACGACA
CAATTTTGCGAATCTTGCGA

Downstream 100 bases:

>100_bases
CGAGTTGGTGGAATTGGATCTGGTTGTCGGACGTGGCCGTGCGTCGGCCCGCGATCGCAATGACAGACCCACTGCACCTG
GGTTGGTTGCATTGGCCACT

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MPQSHAQLRHQLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKSALGDLDGLLDLDDPAALVE
PLDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLLERNAALELQIGVEHAAIPSLSPGEQVRDYFNRAHNYL
PELDERAEALYAELGLTPENLPLRLRQRLADRHGLLVQDAPDLHSDKRSMDAQARVLCLPAHLRPGQQAFQMAAQLALLE
CAPLLDARIADAGFEDAERIALSRIGLSNYFAGALVMPYSAFLHSAQTSRYDIEWLADRFEVGFEAVCHRLSTLQRRGAA
GLPIFFLRVDRAGNVSKRHSATDFHFSHVGGACPLWIVYEAFNQPDRILTQIARMPDGRRYFWLARQVSSGPPGYGRPRK
TFALAMGCDLRHADQLVYARGWDLNAVDDAVPIGPGCLTCERSDCVQRAFPALPRLPARAR

Sequences:

>Translated_461_residues
MPQSHAQLRHQLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKSALGDLDGLLDLDDPAALVE
PLDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLLERNAALELQIGVEHAAIPSLSPGEQVRDYFNRAHNYL
PELDERAEALYAELGLTPENLPLRLRQRLADRHGLLVQDAPDLHSDKRSMDAQARVLCLPAHLRPGQQAFQMAAQLALLE
CAPLLDARIADAGFEDAERIALSRIGLSNYFAGALVMPYSAFLHSAQTSRYDIEWLADRFEVGFEAVCHRLSTLQRRGAA
GLPIFFLRVDRAGNVSKRHSATDFHFSHVGGACPLWIVYEAFNQPDRILTQIARMPDGRRYFWLARQVSSGPPGYGRPRK
TFALAMGCDLRHADQLVYARGWDLNAVDDAVPIGPGCLTCERSDCVQRAFPALPRLPARAR
>Mature_460_residues
PQSHAQLRHQLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKSALGDLDGLLDLDDPAALVEP
LDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLLERNAALELQIGVEHAAIPSLSPGEQVRDYFNRAHNYLP
ELDERAEALYAELGLTPENLPLRLRQRLADRHGLLVQDAPDLHSDKRSMDAQARVLCLPAHLRPGQQAFQMAAQLALLEC
APLLDARIADAGFEDAERIALSRIGLSNYFAGALVMPYSAFLHSAQTSRYDIEWLADRFEVGFEAVCHRLSTLQRRGAAG
LPIFFLRVDRAGNVSKRHSATDFHFSHVGGACPLWIVYEAFNQPDRILTQIARMPDGRRYFWLARQVSSGPPGYGRPRKT
FALAMGCDLRHADQLVYARGWDLNAVDDAVPIGPGCLTCERSDCVQRAFPALPRLPARAR

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 51498; Mature: 51366

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS50943 HTH_CROC1 ; PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQSHAQLRHQLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLK
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
SALGDLDGLLDLDDPAALVEPLDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQ
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
HLLERNAALELQIGVEHAAIPSLSPGEQVRDYFNRAHNYLPELDERAEALYAELGLTPEN
HHHHCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
LPLRLRQRLADRHGLLVQDAPDLHSDKRSMDAQARVLCLPAHLRPGQQAFQMAAQLALLE
CCHHHHHHHHHHCCEEEECCCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
CAPLLDARIADAGFEDAERIALSRIGLSNYFAGALVMPYSAFLHSAQTSRYDIEWLADRF
HHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EVGFEAVCHRLSTLQRRGAAGLPIFFLRVDRAGNVSKRHSATDFHFSHVGGACPLWIVYE
HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCHHHCCCCCHHHHHHH
AFNQPDRILTQIARMPDGRRYFWLARQVSSGPPGYGRPRKTFALAMGCDLRHADQLVYAR
HHCCHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCHHEEEECCCCHHHHHHHHEEC
GWDLNAVDDAVPIGPGCLTCERSDCVQRAFPALPRLPARAR
CCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PQSHAQLRHQLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLK
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
SALGDLDGLLDLDDPAALVEPLDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQ
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
HLLERNAALELQIGVEHAAIPSLSPGEQVRDYFNRAHNYLPELDERAEALYAELGLTPEN
HHHHCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
LPLRLRQRLADRHGLLVQDAPDLHSDKRSMDAQARVLCLPAHLRPGQQAFQMAAQLALLE
CCHHHHHHHHHHCCEEEECCCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
CAPLLDARIADAGFEDAERIALSRIGLSNYFAGALVMPYSAFLHSAQTSRYDIEWLADRF
HHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EVGFEAVCHRLSTLQRRGAAGLPIFFLRVDRAGNVSKRHSATDFHFSHVGGACPLWIVYE
HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCHHHCCCCCHHHHHHH
AFNQPDRILTQIARMPDGRRYFWLARQVSSGPPGYGRPRKTFALAMGCDLRHADQLVYAR
HHCCHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCHHEEEECCCCHHHHHHHHEEC
GWDLNAVDDAVPIGPGCLTCERSDCVQRAFPALPRLPARAR
CCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]