BacMap

Definition	Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession	NC_007508
Length	5,178,466

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The map label for this gene is yjgI [H]

Identifier: 78046737

GI number: 78046737

Start: 1321194

End: 1321907

Strand: Reverse

Name: yjgI [H]

Synonym: XCV1181

Alternate gene names: 78046737

Gene position: 1321907-1321194 (Counterclockwise)

Preceding gene: 78046752

Following gene: 78046736

Centisome position: 25.53

GC content: 67.65

Gene sequence:

>714_bases
ATGTCAGCGTTCAAGGACAAGTCCGTGTTGGTGCTCGGCGGCAGCCGGGGAATTGGGGCTGCCATCGTGCGGCGCTTCGT
GGCCGACGGCGCGCGAGTGGCGTTTACCTACGCCGGCTCCGCCGAAGCGGCGCAGCGCCTGGCCGGCGAAACCGGCAGCA
CCGCGGTGCTGGCAGACAGCGCCGATCGCGATGCGGTCATCGACACGGTGCGACGCAGTGGGCCGCTGGATGTCCTGGTA
GTCAACTCCGGCATCGCCTTGTTCGGCGATGCGCTGGACCAGGATCCGGACGCGGTGGACCGGCTGTTCCGCATCAACGT
GCACGCGCCCTACCACGCCGCCGTGGAGGCCGCGCGGCAGATGCCACCTGGCGGGCGGATCATCGTGATCGGCTCGGTCA
ACGGCGACCGCATGCCGCTGCCCGGCATGGCCTCTTACGCGCTGAGCAAATCCGCACTGCAAGGGCTAGCCCGTGGGCTG
GCGCGCGATTTCGGGCCGCGCGGCATTACCATCAACGTGGTGCAACCCGGCCCGATCGATACCGACGCCAATCCGGAAAA
CGGTCCGATGAAAGACCTGATGCACAGCTTCATGGCGATCAAGCGCCACGGTCGCACCGAGGAAGTGGCGGGCATGGTGG
CCTGGCTGGCGGGCCCGGAAGCGAGCTTTGTAACCGGCGCGATGCATACCATCGATGGTGCGTTCGGGGCGTGA

Upstream 100 bases:

>100_bases
CCGCGCGACCGGGAGATTTCTGTAGTCATTGTTACAAAACTCTTGACGGCAGACGATATTTATTATGTATTACCCGCTAC
ATTAATAGCGAGGTGGGTGC

Downstream 100 bases:

>100_bases
CGCGTTGTCGCTTGGATTGATGCCACTGCAGCTCGACATGTAGCGCAACGCATGGCGGCAAGCGCCCTCCGTCGACGTGC
AGGGCGAGCTGCTGTTGCAT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSAFKDKSVLVLGGSRGIGAAIVRRFVADGARVAFTYAGSAEAAQRLAGETGSTAVLADSADRDAVIDTVRRSGPLDVLV
VNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQMPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGL
ARDFGPRGITINVVQPGPIDTDANPENGPMKDLMHSFMAIKRHGRTEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

Sequences:

>Translated_237_residues
MSAFKDKSVLVLGGSRGIGAAIVRRFVADGARVAFTYAGSAEAAQRLAGETGSTAVLADSADRDAVIDTVRRSGPLDVLV
VNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQMPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGL
ARDFGPRGITINVVQPGPIDTDANPENGPMKDLMHSFMAIKRHGRTEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>Mature_236_residues
SAFKDKSVLVLGGSRGIGAAIVRRFVADGARVAFTYAGSAEAAQRLAGETGSTAVLADSADRDAVIDTVRRSGPLDVLVV
NSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQMPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLA
RDFGPRGITINVVQPGPIDTDANPENGPMKDLMHSFMAIKRHGRTEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=242, Percent_Identity=31.8181818181818, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=29.957805907173, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=30.3643724696356, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI33667109, Length=218, Percent_Identity=28.8990825688073, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=31.1475409836066, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=29.8319327731092, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI7705925, Length=238, Percent_Identity=26.890756302521, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=28.8617886178862, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=30.3643724696356, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=80.168776371308, Blast_Score=392, Evalue=1e-111,
Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=31.9672131147541, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=31.8897637795276, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=34.0248962655602, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=30.0813008130081, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=26.1904761904762, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=28.2258064516129, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787545, Length=253, Percent_Identity=27.6679841897233, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=31.0483870967742, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=31.3953488372093, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=32.520325203252, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=27.5303643724696, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=28.3524904214559, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=27.843137254902, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=30.4878048780488, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=25.7692307692308, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=28.4644194756554, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.0769230769231, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=252, Percent_Identity=26.984126984127, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=26.8199233716475, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=28.4090909090909, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=25.7462686567164, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=26.7175572519084, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=26.2295081967213, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=29.6482412060301, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=27.1062271062271, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=245, Percent_Identity=23.265306122449, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.4516129032258, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=30.5555555555556, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=30.8, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=32.0987654320988, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=30.5785123966942, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=27.8008298755187, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=28.2786885245902, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644337, Length=247, Percent_Identity=29.5546558704453, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24620; Mature: 24489

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFKDKSVLVLGGSRGIGAAIVRRFVADGARVAFTYAGSAEAAQRLAGETGSTAVLADS
CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECC
ADRDAVIDTVRRSGPLDVLVVNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQ
CCCHHHHHHHHCCCCEEEEEECCCCEEECHHCCCCHHHHHHEEEEECCCCHHHHHHHHHH
MPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLARDFGPRGITINVVQPGPID
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TDANPENGPMKDLMHSFMAIKRHGRTEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAFKDKSVLVLGGSRGIGAAIVRRFVADGARVAFTYAGSAEAAQRLAGETGSTAVLADS
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECC
ADRDAVIDTVRRSGPLDVLVVNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQ
CCCHHHHHHHHCCCCEEEEEECCCCEEECHHCCCCHHHHHHEEEEECCCCHHHHHHHHHH
MPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLARDFGPRGITINVVQPGPID
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TDANPENGPMKDLMHSFMAIKRHGRTEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]