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The map label for this gene is 78046406

Identifier: 78046406

GI number: 78046406

Start: 969475

End: 970143

Strand: Reverse

Name: 78046406

Synonym: XCV0850

Alternate gene names: NA

Gene position: 970143-969475 (Counterclockwise)

Preceding gene: 78046412

Following gene: 78046405

Centisome position: 18.73

GC content: 62.48

Gene sequence:

>669_bases
ATGCGCAACACGCCTGCTCATGCCCCACCTTCCCTGATACAACGCGGTGCACGTCTCTTGCTGACCGCATTGGCCCTGCT
GCTGACCACCGCCAACGCGCAGGCCGATGTCATCCTGCATGCCTTCAACTGGCCATATGCCACCGTCGAAGCGCGCGCCA
AGCAGATTGCCGATGCAGGCTATCGCAAGGTGCTGGTCGCCCCCGCGTACCGCTCCGAAGGAAGTGCCTGGTGGGCGCGC
TATCAACCCCAGGACATCCGCCTGATCGACAACCCGCTCGGCGACACCGCTGCATTCAAGAAGATGGTCCAGGCGCTGGC
CAACAACGGCGTGGAAACCTATGCCGACATCGTGTTCAACCACATGGCCAACGAAGCGGCCACGCGTTCAGACCTCAATT
ACCCGGGCAGCGTGGTGCTGTCGCAGTACGCTGCAGACCCCGGCCGTTACGATCGTTGCGCCTGTTCGGCACGCTGCAGT
CAAACTTCCTCAGCGCCAGCGATTTCGGCCCGGCGCAATGCATCAGCAACTACAACGACGCCTACCAAGTGCGTAATTAC
CGCATTTGCGGCGGCGGCAGCGATCCAGGCCTGCCGGATCTCGTGGGCAACGACTGGGTGGTGCAGCAACAGCGCGCCTA
TCTGCAGGCGCTCAAGAGCATTGGCGTGA

Upstream 100 bases:

>100_bases
GCTGCACGCCGTGCGCGCTTTACGGAACAGGGGCCGGAAGCCTTGATGCGGGCATCGCGCACTGCGCGTCGGCCTGCGCT
TACCACTGGAGATCGATCCG

Downstream 100 bases:

>100_bases
CCGGCTTCCGGGTGGATGCGGCCAAGCACATGACCTTCGACCATCTCAACCGCGTCTTCGATGCCGGCATCCGCTCGGGT
GTGTATGTCTTCGGTGAAGT

Product: putative alpha-amylase (fragment)

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRNTPAHAPPSLIQRGARLLLTALALLLTTANAQADVILHAFNWPYATVEARAKQIADAGYRKVLVAPAYRSEGSAWWAR
YQPQDIRLIDNPLGDTAAFKKMVQALANNGVETYADIVFNHMANEAATRSDLNYPGSVVLSQYAADPGRYDRCACSARCS
QTSSAPAISARRNASATTTTPTKCVITAFAAAAAIQACRISWATTGWCSNSAPICRRSRALA

Sequences:

>Translated_222_residues
MRNTPAHAPPSLIQRGARLLLTALALLLTTANAQADVILHAFNWPYATVEARAKQIADAGYRKVLVAPAYRSEGSAWWAR
YQPQDIRLIDNPLGDTAAFKKMVQALANNGVETYADIVFNHMANEAATRSDLNYPGSVVLSQYAADPGRYDRCACSARCS
QTSSAPAISARRNASATTTTPTKCVITAFAAAAAIQACRISWATTGWCSNSAPICRRSRALA
>Mature_222_residues
MRNTPAHAPPSLIQRGARLLLTALALLLTTANAQADVILHAFNWPYATVEARAKQIADAGYRKVLVAPAYRSEGSAWWAR
YQPQDIRLIDNPLGDTAAFKKMVQALANNGVETYADIVFNHMANEAATRSDLNYPGSVVLSQYAADPGRYDRCACSARCS
QTSSAPAISARRNASATTTTPTKCVITAFAAAAAIQACRISWATTGWCSNSAPICRRSRALA

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006046
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 23833; Mature: 23833

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTPAHAPPSLIQRGARLLLTALALLLTTANAQADVILHAFNWPYATVEARAKQIADAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
YRKVLVAPAYRSEGSAWWARYQPQDIRLIDNPLGDTAAFKKMVQALANNGVETYADIVFN
CCEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
HMANEAATRSDLNYPGSVVLSQYAADPGRYDRCACSARCSQTSSAPAISARRNASATTTT
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCCCCCC
PTKCVITAFAAAAAIQACRISWATTGWCSNSAPICRRSRALA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MRNTPAHAPPSLIQRGARLLLTALALLLTTANAQADVILHAFNWPYATVEARAKQIADAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
YRKVLVAPAYRSEGSAWWARYQPQDIRLIDNPLGDTAAFKKMVQALANNGVETYADIVFN
CCEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
HMANEAATRSDLNYPGSVVLSQYAADPGRYDRCACSARCSQTSSAPAISARRNASATTTT
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCCCCCC
PTKCVITAFAAAAAIQACRISWATTGWCSNSAPICRRSRALA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2449422 [H]