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The map label for this gene is yncD [H]

Identifier: 78046307

GI number: 78046307

Start: 854924

End: 856969

Strand: Reverse

Name: yncD [H]

Synonym: XCV0751

Alternate gene names: 78046307

Gene position: 856969-854924 (Counterclockwise)

Preceding gene: 78046308

Following gene: 78046304

Centisome position: 16.55

GC content: 64.03

Gene sequence:

>2046_bases
ATGAAGACCCATCCCCTCGTGGCGACTGTCGCCGCTCTGCTGTTTGCTGCCGACGCACGCGCGCAGTCCTCCGATTCGGC
GCTGACGCTCGGCAAGGTCGACGTCCATCAGCATCACGAAGGCCAGCTCAGTGCGCATCAGGTGCTGACGTCGGTGGATG
TCCTGGGCGCCGACCAGATCGAGGACAAGAACGTGTCCTACAGCTGGGAATTGCTGGGGCAGATGCCAGGCATGCAGTTG
ACCGAAACCCGACAGGGCGCCGAATCGGGCAAGGTCAGCTTCCGCGCCTTCAACGGCGAGGGCTATCTCAATGCCATCAA
GACCCTGATCGACGGCATTCCCAGCAACGTCAACAGCGGCAACCAGCGCTTCGTCGACATGCTGTTTCCGCTGGAAATCA
GCTACATCGAGGTGGTGCGTGGCACCAACGATCCGCGCTATGGGCTGCACAACATCGGCGGCAACATCAACTTCGGCACC
CGCCAGGGCGGCAGCTACACCGATGCCCGCGTGGCCTACGGCAGTTACGCCAGCCGCGATGCGCAGATCGCGATAGGGCG
CGAACGCGACGGATTCGCGCAGAACTACTTCATCGGCGCACAGGCATCGAATGGCTATCGTGCGCACGATCGCTCCAGCA
AGCATGTGCTGGGCGGCAAATGGTTCTACGGCAGTCTCGACGACGGCATGCGCATCGGCCTGACGGCACGCGCGTACCGC
ACCCAGGCCGACGAGCCGGGCTTCATGACCGCAGCAGAGTTGCAGGCGGATCGTCGCAACTCGGACCGCCGCAACCGCAA
CGATGGCGACGACCGCGACATGCAGCAGCTCGGCGTGCATCTGGACCTGAAACTGACCGACACCCTGTTCCTGGGCAGCA
AGCTTTACTACAACCGCTACGAGGACGACCGCCGGGTGACCTTCAGCGACCTGCCCACCGGCAATGCCCCGCGCCAGCGT
CGGCGCTGGAACGAAACGCAGGTGGGCATGCTCAACACCCTGACCTGGCGCGCCAACGACCTGCTGACCTTGGAAGGCGG
CATCAACTACGAACATCAGGACAATGCGTACCGGCGCGAACGCTTCAACTATGCCGAGCCCACCGACTTTGCCGCAGTGC
CAGCGCGCATCCAGAACGACGACCGCTATACCTTCGACAATTGGGGCGCCTACGTACAGGCCATCTATCAGCCGGTCGAG
GCCCTGAAGCTGGTGCCGGCCTATCGCGTGGACCGCTTCGACGGCGACACACAGCTACCGGGTGCGGTGCGCGCACCGCT
GCAGCGTTACGGCAGCATCGGGCAACCCAAACTCAGCGTGATCTACGCCCTGACGCCCAGCACCAACGTGTACGCCAACT
GGGGCCGTACCTTCCAGGTGTTGACCGGCTCCACCGCCCCGGCCTATCTCACCCCAGGGCAAGCCGGCATCCGCCCTTCC
ACCAACACCGGCGTCGAGCTGGGCATGAAATTCAGCCCATTTGCAGGCAGCCAGGCGCGTATCGCCGTCTGGCAACAGGA
TGCGGAAAACGAGGTGTCGAACATGCCGGCCACCGGCACCACCGTCACCTTGGGCAAGACGCGTCGCCGCGGCGTGGATG
CGCAGATCAGCGCACAGCTGGGCGATCGATGGACGCTCTGGGCATCGCATGCCTACCAGGAAGCCAGGATCACGCGCGAC
GACCGTGCCGCCGCGCTTTCGCTGCAAGGCAACGAAGTCATCGCCACGCCCCGCTACATCAGCAACATCGGCGTGGACTA
CCGCGCGACCGAGGCGCTGCAACTGGGCCTGCAGGGACGCGCCCAGGGCAACTACTACCTCGAAGAGCGCAACGTGGCGG
GCAAGTACGGCGGCTTTGCAACGCTCGACCTCACCGCGCGCTATACGATCAACCCGAACTGGAGCGTGGACGTGCAGGTC
CGCAATGCCACCGGTCGCGAGTATGCCTACGTGTGGTACGACAGCTTCTTCTGGGCACAGGCACAGCCCATGTTCTCGCC
AGCGGCCGGACGGCAGCTGTATCTCGGGCTGAGAATGAAGCTGTAA

Upstream 100 bases:

>100_bases
CAAAGGCGGCAGCAGCGCGACGCGAATTGAATTTGTCAGAACATGTTATAACATGTCATTATTGACACGATTCCATTGGC
CCGCAGGTATTGCCCGCTTC

Downstream 100 bases:

>100_bases
CGGCCGCGGCAGCGGTGGCGAGGTGCGAACCACGGGTCCGCGATGCAGCGTAGCGGCTGCACAAGCCGTCATCGCCAAGC
CGGCACCTGGCGCCCCGCCG

Product: TonB-dependent outer membrane receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MKTHPLVATVAALLFAADARAQSSDSALTLGKVDVHQHHEGQLSAHQVLTSVDVLGADQIEDKNVSYSWELLGQMPGMQL
TETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSGNQRFVDMLFPLEISYIEVVRGTNDPRYGLHNIGGNINFGT
RQGGSYTDARVAYGSYASRDAQIAIGRERDGFAQNYFIGAQASNGYRAHDRSSKHVLGGKWFYGSLDDGMRIGLTARAYR
TQADEPGFMTAAELQADRRNSDRRNRNDGDDRDMQQLGVHLDLKLTDTLFLGSKLYYNRYEDDRRVTFSDLPTGNAPRQR
RRWNETQVGMLNTLTWRANDLLTLEGGINYEHQDNAYRRERFNYAEPTDFAAVPARIQNDDRYTFDNWGAYVQAIYQPVE
ALKLVPAYRVDRFDGDTQLPGAVRAPLQRYGSIGQPKLSVIYALTPSTNVYANWGRTFQVLTGSTAPAYLTPGQAGIRPS
TNTGVELGMKFSPFAGSQARIAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQISAQLGDRWTLWASHAYQEARITRD
DRAAALSLQGNEVIATPRYISNIGVDYRATEALQLGLQGRAQGNYYLEERNVAGKYGGFATLDLTARYTINPNWSVDVQV
RNATGREYAYVWYDSFFWAQAQPMFSPAAGRQLYLGLRMKL

Sequences:

>Translated_681_residues
MKTHPLVATVAALLFAADARAQSSDSALTLGKVDVHQHHEGQLSAHQVLTSVDVLGADQIEDKNVSYSWELLGQMPGMQL
TETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSGNQRFVDMLFPLEISYIEVVRGTNDPRYGLHNIGGNINFGT
RQGGSYTDARVAYGSYASRDAQIAIGRERDGFAQNYFIGAQASNGYRAHDRSSKHVLGGKWFYGSLDDGMRIGLTARAYR
TQADEPGFMTAAELQADRRNSDRRNRNDGDDRDMQQLGVHLDLKLTDTLFLGSKLYYNRYEDDRRVTFSDLPTGNAPRQR
RRWNETQVGMLNTLTWRANDLLTLEGGINYEHQDNAYRRERFNYAEPTDFAAVPARIQNDDRYTFDNWGAYVQAIYQPVE
ALKLVPAYRVDRFDGDTQLPGAVRAPLQRYGSIGQPKLSVIYALTPSTNVYANWGRTFQVLTGSTAPAYLTPGQAGIRPS
TNTGVELGMKFSPFAGSQARIAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQISAQLGDRWTLWASHAYQEARITRD
DRAAALSLQGNEVIATPRYISNIGVDYRATEALQLGLQGRAQGNYYLEERNVAGKYGGFATLDLTARYTINPNWSVDVQV
RNATGREYAYVWYDSFFWAQAQPMFSPAAGRQLYLGLRMKL
>Mature_681_residues
MKTHPLVATVAALLFAADARAQSSDSALTLGKVDVHQHHEGQLSAHQVLTSVDVLGADQIEDKNVSYSWELLGQMPGMQL
TETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSGNQRFVDMLFPLEISYIEVVRGTNDPRYGLHNIGGNINFGT
RQGGSYTDARVAYGSYASRDAQIAIGRERDGFAQNYFIGAQASNGYRAHDRSSKHVLGGKWFYGSLDDGMRIGLTARAYR
TQADEPGFMTAAELQADRRNSDRRNRNDGDDRDMQQLGVHLDLKLTDTLFLGSKLYYNRYEDDRRVTFSDLPTGNAPRQR
RRWNETQVGMLNTLTWRANDLLTLEGGINYEHQDNAYRRERFNYAEPTDFAAVPARIQNDDRYTFDNWGAYVQAIYQPVE
ALKLVPAYRVDRFDGDTQLPGAVRAPLQRYGSIGQPKLSVIYALTPSTNVYANWGRTFQVLTGSTAPAYLTPGQAGIRPS
TNTGVELGMKFSPFAGSQARIAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQISAQLGDRWTLWASHAYQEARITRD
DRAAALSLQGNEVIATPRYISNIGVDYRATEALQLGLQGRAQGNYYLEERNVAGKYGGFATLDLTARYTINPNWSVDVQV
RNATGREYAYVWYDSFFWAQAQPMFSPAAGRQLYLGLRMKL

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=659, Percent_Identity=24.1274658573596, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1790743, Length=578, Percent_Identity=23.1833910034602, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 75902; Mature: 75902

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTHPLVATVAALLFAADARAQSSDSALTLGKVDVHQHHEGQLSAHQVLTSVDVLGADQI
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
EDKNVSYSWELLGQMPGMQLTETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSG
CCCCCCEEEHHHHCCCCCEEHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC
NQRFVDMLFPLEISYIEVVRGTNDPRYGLHNIGGNINFGTRQGGSYTDARVAYGSYASRD
CCEEEEEECCCEEEEEEEEECCCCCCCCHHHCCCCEECCCCCCCCCCCCEEEECCCCCCC
AQIAIGRERDGFAQNYFIGAQASNGYRAHDRSSKHVLGGKWFYGSLDDGMRIGLTARAYR
CEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCEEEECCCCCCCEEEEEEEEHH
TQADEPGFMTAAELQADRRNSDRRNRNDGDDRDMQQLGVHLDLKLTDTLFLGSKLYYNRY
CCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEEEEEECEEEECCEEEECCC
EDDRRVTFSDLPTGNAPRQRRRWNETQVGMLNTLTWRANDLLTLEGGINYEHQDNAYRRE
CCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHH
RFNYAEPTDFAAVPARIQNDDRYTFDNWGAYVQAIYQPVEALKLVPAYRVDRFDGDTQLP
HCCCCCCCCCEECCCEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
GAVRAPLQRYGSIGQPKLSVIYALTPSTNVYANWGRTFQVLTGSTAPAYLTPGQAGIRPS
HHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEECCCCCCEECCCCCCCCCC
TNTGVELGMKFSPFAGSQARIAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQISAQL
CCCCEEECEEECCCCCCCEEEEEEECCHHHHHHCCCCCCCEEEECCHHHCCCCCEEEECC
GDRWTLWASHAYQEARITRDDRAAALSLQGNEVIATPRYISNIGVDYRATEALQLGLQGR
CCEEEEEEHHCHHHHHCCCCCCEEEEEECCCEEEECCHHHHHCCCCCEECHHHHCCCCCC
AQGNYYLEERNVAGKYGGFATLDLTARYTINPNWSVDVQVRNATGREYAYVWYDSFFWAQ
CCCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEECEEEEC
AQPMFSPAAGRQLYLGLRMKL
CCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKTHPLVATVAALLFAADARAQSSDSALTLGKVDVHQHHEGQLSAHQVLTSVDVLGADQI
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
EDKNVSYSWELLGQMPGMQLTETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSG
CCCCCCEEEHHHHCCCCCEEHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC
NQRFVDMLFPLEISYIEVVRGTNDPRYGLHNIGGNINFGTRQGGSYTDARVAYGSYASRD
CCEEEEEECCCEEEEEEEEECCCCCCCCHHHCCCCEECCCCCCCCCCCCEEEECCCCCCC
AQIAIGRERDGFAQNYFIGAQASNGYRAHDRSSKHVLGGKWFYGSLDDGMRIGLTARAYR
CEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCEEEECCCCCCCEEEEEEEEHH
TQADEPGFMTAAELQADRRNSDRRNRNDGDDRDMQQLGVHLDLKLTDTLFLGSKLYYNRY
CCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEEEEEECEEEECCEEEECCC
EDDRRVTFSDLPTGNAPRQRRRWNETQVGMLNTLTWRANDLLTLEGGINYEHQDNAYRRE
CCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHH
RFNYAEPTDFAAVPARIQNDDRYTFDNWGAYVQAIYQPVEALKLVPAYRVDRFDGDTQLP
HCCCCCCCCCEECCCEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
GAVRAPLQRYGSIGQPKLSVIYALTPSTNVYANWGRTFQVLTGSTAPAYLTPGQAGIRPS
HHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEECCCCCCEECCCCCCCCCC
TNTGVELGMKFSPFAGSQARIAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQISAQL
CCCCEEECEEECCCCCCCEEEEEEECCHHHHHHCCCCCCCEEEECCHHHCCCCCEEEECC
GDRWTLWASHAYQEARITRDDRAAALSLQGNEVIATPRYISNIGVDYRATEALQLGLQGR
CCEEEEEEHHCHHHHHCCCCCCEEEEEECCCEEEECCHHHHHCCCCCEECHHHHCCCCCC
AQGNYYLEERNVAGKYGGFATLDLTARYTINPNWSVDVQVRNATGREYAYVWYDSFFWAQ
CCCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEECEEEEC
AQPMFSPAAGRQLYLGLRMKL
CCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]