| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is fabG [H]
Identifier: 78046015
GI number: 78046015
Start: 519382
End: 520140
Strand: Reverse
Name: fabG [H]
Synonym: XCV0459
Alternate gene names: 78046015
Gene position: 520140-519382 (Counterclockwise)
Preceding gene: 78046016
Following gene: 78046006
Centisome position: 10.04
GC content: 64.95
Gene sequence:
>759_bases ATGTCAAACACCGCAGTTCGTCCGCAACGCGTGCTGATCGCTGGCGGCAGCCGTGGCATTGGCCTGGCGATCGCAGAAGG CTTCGTGCGTCATGGCGCGCAGGTTTCGATCTGCGCACGCAATGCCGCCGGTCTTGCACACGCTGCAGACGCACTGGCAG CGCATGGCACCCCGGTGCATACACTGCCTTGCGACCTGGCAGACGCCACGCAGATCGATGCCTACGTGCACGCTGCAGCA CAAGCGCTGGGCGGTCTGGACGTAGTCATCAACAACGCCTCCGGCTTTGGCCATGGCAACGACGATGCAAGCTGGCAGGC GGGCCTGGATGTCGACCTGATGGCCGCAGTGCGCTGCAACCGCGCCGCGTTGCCGTATCTGCGCCGCAGCGCGGCTGCGG TGATCCTCAACATCAGTTCGATCAATGCGCAACGCCCCACCCCGCGCGCGATCGCCTACTCCACCGCCAAGGCCGCGCTC GATTACTACACCACCACCCTGGCTGCAGAGCTGGCGCGCGAGCGCATCCGCGTCAATGCCATCTCGCCTGGCTCAATCGA ATTTCCAGGTGGTCTGTGGGACAAACGCAGCCGCGAGGAGCCGGAGCTCTACGCACGCATCCGCGACAGCATCCCGTTCG GCGGCTTCGGACAGGTGCAGCATGTTGCCGATGCCGCGTTGTTTCTGGCATCGCCACAGGCGAGTTGGATCACCGGGCAA GTGTTGGCCGTGGATGGCGGGCAGTCGCTGGGCGTGTAA
Upstream 100 bases:
>100_bases ATGCAGGGCGATCGTCGTCCGTGCCGCACTTGCGATACGCGTGGCGACCCCGTGGCCCGCGGCTATCGGATAATACGGCC ATCCAAACCGAGCAGCCGCC
Downstream 100 bases:
>100_bases GCACCATCTCTGCTGACGGAGATACCGATCGGCTGCTCGCGGACTCGTAGGAGCGTGCCTGCGCGCGACCCAGCTGCATC GGTAACGCGTCCTCGCGCGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSNTAVRPQRVLIAGGSRGIGLAIAEGFVRHGAQVSICARNAAGLAHAADALAAHGTPVHTLPCDLADATQIDAYVHAAA QALGGLDVVINNASGFGHGNDDASWQAGLDVDLMAAVRCNRAALPYLRRSAAAVILNISSINAQRPTPRAIAYSTAKAAL DYYTTTLAAELARERIRVNAISPGSIEFPGGLWDKRSREEPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ VLAVDGGQSLGV
Sequences:
>Translated_252_residues MSNTAVRPQRVLIAGGSRGIGLAIAEGFVRHGAQVSICARNAAGLAHAADALAAHGTPVHTLPCDLADATQIDAYVHAAA QALGGLDVVINNASGFGHGNDDASWQAGLDVDLMAAVRCNRAALPYLRRSAAAVILNISSINAQRPTPRAIAYSTAKAAL DYYTTTLAAELARERIRVNAISPGSIEFPGGLWDKRSREEPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ VLAVDGGQSLGV >Mature_251_residues SNTAVRPQRVLIAGGSRGIGLAIAEGFVRHGAQVSICARNAAGLAHAADALAAHGTPVHTLPCDLADATQIDAYVHAAAQ ALGGLDVVINNASGFGHGNDDASWQAGLDVDLMAAVRCNRAALPYLRRSAAAVILNISSINAQRPTPRAIAYSTAKAALD YYTTTLAAELARERIRVNAISPGSIEFPGGLWDKRSREEPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQV LAVDGGQSLGV
Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=30.8641975308642, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=30.1652892561983, Blast_Score=101, Evalue=5e-22, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=32.3886639676113, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=257, Percent_Identity=30.7392996108949, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=34.468085106383, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=29.3877551020408, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4503301, Length=227, Percent_Identity=30.3964757709251, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=28.6852589641434, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723750, Length=246, Percent_Identity=25.2032520325203, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI40254986, Length=190, Percent_Identity=34.7368421052632, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI31542939, Length=217, Percent_Identity=27.1889400921659, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=32.8282828282828, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI66933014, Length=231, Percent_Identity=26.8398268398268, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=29.7142857142857, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI32455239, Length=189, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5031765, Length=189, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=30.2083333333333, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI4504503, Length=216, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI224922801, Length=162, Percent_Identity=26.5432098765432, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=32.0833333333333, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=30.7377049180328, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=31.3253012048193, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=30.1204819277108, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=27.4509803921569, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=29.5719844357977, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=26.984126984127, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=30.5555555555556, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=28.3400809716599, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=24.901185770751, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=31.0483870967742, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787891, Length=256, Percent_Identity=26.171875, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787545, Length=264, Percent_Identity=26.5151515151515, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=33.2046332046332, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=34.375, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=34.6153846153846, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=33.0769230769231, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=30.7392996108949, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=32.319391634981, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=31.0077519379845, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30.8, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562906, Length=257, Percent_Identity=31.1284046692607, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=30.6451612903226, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=30.6513409961686, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=30.6772908366534, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.0606060606061, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=28.957528957529, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=29.7297297297297, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=28.8461538461538, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17561402, Length=244, Percent_Identity=30.327868852459, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=29.6153846153846, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=29.6153846153846, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=30.4878048780488, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17538486, Length=257, Percent_Identity=31.9066147859922, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=27.8884462151394, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17561272, Length=240, Percent_Identity=28.3333333333333, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=25.5725190839695, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=25.5725190839695, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=26.8482490272374, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17508651, Length=246, Percent_Identity=27.2357723577236, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=25.1968503937008, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=35.6275303643725, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=32.5490196078431, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=30.6772908366534, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=29.3877551020408, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=30.6772908366534, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21357673, Length=226, Percent_Identity=31.4159292035398, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI24644337, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21358495, Length=185, Percent_Identity=32.4324324324324, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=24.7011952191235, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26229; Mature: 26098
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTAVRPQRVLIAGGSRGIGLAIAEGFVRHGAQVSICARNAAGLAHAADALAAHGTPVH CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCE TLPCDLADATQIDAYVHAAAQALGGLDVVINNASGFGHGNDDASWQAGLDVDLMAAVRCN ECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCC RAALPYLRRSAAAVILNISSINAQRPTPRAIAYSTAKAALDYYTTTLAAELARERIRVNA CHHHHHHHHCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEE ISPGSIEFPGGLWDKRSREEPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ ECCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCEEEEE VLAVDGGQSLGV EEEEECCCCCCC >Mature Secondary Structure SNTAVRPQRVLIAGGSRGIGLAIAEGFVRHGAQVSICARNAAGLAHAADALAAHGTPVH CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCE TLPCDLADATQIDAYVHAAAQALGGLDVVINNASGFGHGNDDASWQAGLDVDLMAAVRCN ECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCC RAALPYLRRSAAAVILNISSINAQRPTPRAIAYSTAKAALDYYTTTLAAELARERIRVNA CHHHHHHHHCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEE ISPGSIEFPGGLWDKRSREEPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ ECCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCEEEEE VLAVDGGQSLGV EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]