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The map label for this gene is hrpF [H]

Identifier: 78045967

GI number: 78045967

Start: 462449

End: 464869

Strand: Reverse

Name: hrpF [H]

Synonym: XCV0411

Alternate gene names: 78045967

Gene position: 464869-462449 (Counterclockwise)

Preceding gene: 78045971

Following gene: 78045966

Centisome position: 8.98

GC content: 60.22

Gene sequence:

>2421_bases
ATGTCGCTCAACACGCTTTCTACCGGGAGCAACCCCAGCCAACTGCTGGGCACCTCTTTCAACGAGTCGTCTTCATCGGA
GCTGCTCGGGTCGGATTCGTCCAAGGATGGCTCCGACTTGCCATCGACGATGGATAACATCTTTCAGCGAATCTACCTGC
TGCTGGAGGCCCTCCAGGCCAACACGCCAAACAGCGCGTCGGGTAATGCGCCGGCCAATACGGCAAGCGGCGATGCCGAT
ACCCAGCTGTCCGCATCGGACTGGCAGGCCACCCAGCCGATCGAAAAGCGCACCTCCTGGCCATCGCTGGGCTACGACTT
CGATCCCAAGCACATCAAGGGGAAGGATGCGCCGCCGGCGCTGGAAGGTTCGACGGTGACTTGGAACGATGGCACGCTGA
CCAAGTCGGAGCTTCAGATCGTTTCGACGCTGAATGCGCACAAGGACCAGATGCCGCTCGAGTACAAGAATCTCGACGAC
AAGATCAACGACCCTTCCACGCCCGCCGACCTGAAGGCTGCATTGCAGGGGCTGAAACAGGACCCGCGCTTGTTCTTTGC
GATCGGTTCCCAGGGAGACGGCAAGTGCGGCGGCAAGATCAGCGCGCAGGATCTTTGGGATTTCTCTGATTCACATCCGC
AGGTCAAGGAACTGGGCGGGAAGAACGACGAGTTCAACCCCAAGAACATCAAGGGGTCCAACCCGCCGCCGGCGGCGGAG
GGCTCGACGGTCACCTGGAACGAGGGCCAGCTCAATCAATCCGAACTGGAGATTGTTTCGGTTCTGGATCGGCACAAGGA
CCAGGTCGACTCGCTGTCCTTCGATCAGCTGGACGCCAAGATCAACGACCCGTCGACGCAGCCTGACTTGAAGAAAGCGC
TGCAAGGATTGCAGAAGGATCCGCGGTTGTTCTTTGCCATCGGCTCGCAGAAGGACGGCAAGTGCGGCGGCAAGATCAAG
GCGCAGGACCTCACAGACTTCTCGTACTACCATCCGCAGATTGCCGAATACAACGACAAGCAGGCAAAGAGCTACACGCA
GAACTACATCGCATCCGATAGCCCCGACAAAACCAAGGCGTCGGTCATGACCAAAAGCGATGCCCTGCGCGAGCTGTATC
GCTATTCCGACTATCTGCCCGGCAACCTGAGCGAGGACGAATTCGCCAAGATCGTCGATGGCGACAGCAAGACCGGCAAG
TGCCCGCCGCAGGTGATCGCGGCTGCTCAATATTTTCGCGATCATCCGGACGAGTGGAAGGAATTTGCAGGGGACTCGGG
CTCGATGAGCACGCCGGACTTCCTGCAGAAATCCACCTCCGAGATGCACCTGACCGCGGACGAGCAGAAGACGCTGGACA
CCATCAACAGTCATCAGGACGCGTTCTACGGCGACGGCAAGGAAATCACGCGCGACAAGCTCGACGCGATCTCCAAGGAC
GACAAGGCCGACCCGGCCGTCAAGCAGGCCGCGACGCAGTTGTTGGCCGACCCGCTGCTGTTCGGCTTGTTGAACAACTC
CATCACCGGCTACAAGAAGCCCCATCACTTCTTCGGCGGCGGCCATGTCGTCGATTCGGGCAAGATCAGCCAGGACGATT
TCCGGCAGTTCTATGACCACATGAGTGCAGCCAACAAGACCGTGGACACGCCGGCCACGCACGAGGCGAGCTCGCCCGAT
CAGCAAAAGGCTGTCGCGGACATGCTGGTGGGCAAGGACGATCCGCCGGCGATTAAGAAGCCCAAAAAGGATGTCGGCAC
GTTCCAACAGGGCCTGCACGAGTTCCTCAAGTGGGACAGCAAGATCCTGGACTGGATGTCCGTGGGGCTCAGCGCATTGA
ACGGGATCCCCATCATCGGCGAAATTGCCGATGCGGCGTCGATTGCATTGGAGAGCGAGGCGCAGGCGGCGCAGGTGGTC
GACACCGCGATTCAAGGTGGCGACATGTCGCTGGCCTTGAAGCTGGCCGGCATCAATATGGCCGGGGCGGTGGTTGGAGC
GGTCGGCGGCCCTACGGCCAGAATCGGGGCCAAGGGCGTGGCCAAGGGCGTGGCCGAAGCCGCGGCCAAGGAAGCAGCCG
AGGGCGCGGCCAAGGGAGCTGCAAAGGGAACTGCCAAGAGCGTGGCCAAAGGTGGCGGTAAAACCGCGGCCGAACGGCCG
AGCGCCGCTGAGTTCGCAAAAGGCTACGTGGGTGGCACCGCCATCAGTAAATCGACTGAAATTCTCAAGACGCCCGTCTT
GGCGGGCTTGCATTACGAAGAATATCAACTGGACAAGCAGAAGGACGGAGAAATCCACCAGAAGATGGAAAATGCCGGCG
GCGTCCCAGTGGGCAAGCAGATTATCCCCAAAGGCATCGCCGACAACTTCGAGGGCGACCTGCGGCAGAATCTGCGCAAT
GTCCGGATCCGTCGCAGATAA

Upstream 100 bases:

>100_bases
CAACATACGTCTACACCGCATGGGCGCATCCGTGCGGCCGTATAAGAATCAACTTATACGAAGGTGCTCTGCCAATTCTG
TCATTCGCGAGGCCGCCTCT

Downstream 100 bases:

>100_bases
CGCGCATGCCACAGCGAAGTTTCGTTTCGGCGCCTTGCCGCTGGCGTTGGTGCTCGAAGGCAGGCGTTGAGGCAACGCCG
GTCGATGGGCCACGACGTGC

Product: HrpF protein

Products: NA

Alternate protein names: Nodulation protein nolX [H]

Number of amino acids: Translated: 806; Mature: 805

Protein sequence:

>806_residues
MSLNTLSTGSNPSQLLGTSFNESSSSELLGSDSSKDGSDLPSTMDNIFQRIYLLLEALQANTPNSASGNAPANTASGDAD
TQLSASDWQATQPIEKRTSWPSLGYDFDPKHIKGKDAPPALEGSTVTWNDGTLTKSELQIVSTLNAHKDQMPLEYKNLDD
KINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKISAQDLWDFSDSHPQVKELGGKNDEFNPKNIKGSNPPPAAE
GSTVTWNEGQLNQSELEIVSVLDRHKDQVDSLSFDQLDAKINDPSTQPDLKKALQGLQKDPRLFFAIGSQKDGKCGGKIK
AQDLTDFSYYHPQIAEYNDKQAKSYTQNYIASDSPDKTKASVMTKSDALRELYRYSDYLPGNLSEDEFAKIVDGDSKTGK
CPPQVIAAAQYFRDHPDEWKEFAGDSGSMSTPDFLQKSTSEMHLTADEQKTLDTINSHQDAFYGDGKEITRDKLDAISKD
DKADPAVKQAATQLLADPLLFGLLNNSITGYKKPHHFFGGGHVVDSGKISQDDFRQFYDHMSAANKTVDTPATHEASSPD
QQKAVADMLVGKDDPPAIKKPKKDVGTFQQGLHEFLKWDSKILDWMSVGLSALNGIPIIGEIADAASIALESEAQAAQVV
DTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKGVAKGVAEAAAKEAAEGAAKGAAKGTAKSVAKGGGKTAAERP
SAAEFAKGYVGGTAISKSTEILKTPVLAGLHYEEYQLDKQKDGEIHQKMENAGGVPVGKQIIPKGIADNFEGDLRQNLRN
VRIRRR

Sequences:

>Translated_806_residues
MSLNTLSTGSNPSQLLGTSFNESSSSELLGSDSSKDGSDLPSTMDNIFQRIYLLLEALQANTPNSASGNAPANTASGDAD
TQLSASDWQATQPIEKRTSWPSLGYDFDPKHIKGKDAPPALEGSTVTWNDGTLTKSELQIVSTLNAHKDQMPLEYKNLDD
KINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKISAQDLWDFSDSHPQVKELGGKNDEFNPKNIKGSNPPPAAE
GSTVTWNEGQLNQSELEIVSVLDRHKDQVDSLSFDQLDAKINDPSTQPDLKKALQGLQKDPRLFFAIGSQKDGKCGGKIK
AQDLTDFSYYHPQIAEYNDKQAKSYTQNYIASDSPDKTKASVMTKSDALRELYRYSDYLPGNLSEDEFAKIVDGDSKTGK
CPPQVIAAAQYFRDHPDEWKEFAGDSGSMSTPDFLQKSTSEMHLTADEQKTLDTINSHQDAFYGDGKEITRDKLDAISKD
DKADPAVKQAATQLLADPLLFGLLNNSITGYKKPHHFFGGGHVVDSGKISQDDFRQFYDHMSAANKTVDTPATHEASSPD
QQKAVADMLVGKDDPPAIKKPKKDVGTFQQGLHEFLKWDSKILDWMSVGLSALNGIPIIGEIADAASIALESEAQAAQVV
DTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKGVAKGVAEAAAKEAAEGAAKGAAKGTAKSVAKGGGKTAAERP
SAAEFAKGYVGGTAISKSTEILKTPVLAGLHYEEYQLDKQKDGEIHQKMENAGGVPVGKQIIPKGIADNFEGDLRQNLRN
VRIRRR
>Mature_805_residues
SLNTLSTGSNPSQLLGTSFNESSSSELLGSDSSKDGSDLPSTMDNIFQRIYLLLEALQANTPNSASGNAPANTASGDADT
QLSASDWQATQPIEKRTSWPSLGYDFDPKHIKGKDAPPALEGSTVTWNDGTLTKSELQIVSTLNAHKDQMPLEYKNLDDK
INDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKISAQDLWDFSDSHPQVKELGGKNDEFNPKNIKGSNPPPAAEG
STVTWNEGQLNQSELEIVSVLDRHKDQVDSLSFDQLDAKINDPSTQPDLKKALQGLQKDPRLFFAIGSQKDGKCGGKIKA
QDLTDFSYYHPQIAEYNDKQAKSYTQNYIASDSPDKTKASVMTKSDALRELYRYSDYLPGNLSEDEFAKIVDGDSKTGKC
PPQVIAAAQYFRDHPDEWKEFAGDSGSMSTPDFLQKSTSEMHLTADEQKTLDTINSHQDAFYGDGKEITRDKLDAISKDD
KADPAVKQAATQLLADPLLFGLLNNSITGYKKPHHFFGGGHVVDSGKISQDDFRQFYDHMSAANKTVDTPATHEASSPDQ
QKAVADMLVGKDDPPAIKKPKKDVGTFQQGLHEFLKWDSKILDWMSVGLSALNGIPIIGEIADAASIALESEAQAAQVVD
TAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKGVAKGVAEAAAKEAAEGAAKGAAKGTAKSVAKGGGKTAAERPS
AAEFAKGYVGGTAISKSTEILKTPVLAGLHYEEYQLDKQKDGEIHQKMENAGGVPVGKQIIPKGIADNFEGDLRQNLRNV
RIRRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted. Note=Secreted by the type II secretion system and delivered into the host plant cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008718 [H]

Pfam domain/function: PF05819 NolX [H]

EC number: NA

Molecular weight: Translated: 86422; Mature: 86290

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNTLSTGSNPSQLLGTSFNESSSSELLGSDSSKDGSDLPSTMDNIFQRIYLLLEALQA
CCCCCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
NTPNSASGNAPANTASGDADTQLSASDWQATQPIEKRTSWPSLGYDFDPKHIKGKDAPPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
LEGSTVTWNDGTLTKSELQIVSTLNAHKDQMPLEYKNLDDKINDPSTPADLKAALQGLKQ
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCC
DPRLFFAIGSQGDGKCGGKISAQDLWDFSDSHPQVKELGGKNDEFNPKNIKGSNPPPAAE
CCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
GSTVTWNEGQLNQSELEIVSVLDRHKDQVDSLSFDQLDAKINDPSTQPDLKKALQGLQKD
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCC
PRLFFAIGSQKDGKCGGKIKAQDLTDFSYYHPQIAEYNDKQAKSYTQNYIASDSPDKTKA
CCEEEEECCCCCCCCCCEEECCCCCCHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCHHHH
SVMTKSDALRELYRYSDYLPGNLSEDEFAKIVDGDSKTGKCPPQVIAAAQYFRDHPDEWK
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHH
EFAGDSGSMSTPDFLQKSTSEMHLTADEQKTLDTINSHQDAFYGDGKEITRDKLDAISKD
HHCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
DKADPAVKQAATQLLADPLLFGLLNNSITGYKKPHHFFGGGHVVDSGKISQDDFRQFYDH
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
MSAANKTVDTPATHEASSPDQQKAVADMLVGKDDPPAIKKPKKDVGTFQQGLHEFLKWDS
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KILDWMSVGLSALNGIPIIGEIADAASIALESEAQAAQVVDTAIQGGDMSLALKLAGINM
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH
AGAVVGAVGGPTARIGAKGVAKGVAEAAAKEAAEGAAKGAAKGTAKSVAKGGGKTAAERP
HHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
SAAEFAKGYVGGTAISKSTEILKTPVLAGLHYEEYQLDKQKDGEIHQKMENAGGVPVGKQ
CHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCHH
IIPKGIADNFEGDLRQNLRNVRIRRR
HHCHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLNTLSTGSNPSQLLGTSFNESSSSELLGSDSSKDGSDLPSTMDNIFQRIYLLLEALQA
CCCCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
NTPNSASGNAPANTASGDADTQLSASDWQATQPIEKRTSWPSLGYDFDPKHIKGKDAPPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
LEGSTVTWNDGTLTKSELQIVSTLNAHKDQMPLEYKNLDDKINDPSTPADLKAALQGLKQ
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCC
DPRLFFAIGSQGDGKCGGKISAQDLWDFSDSHPQVKELGGKNDEFNPKNIKGSNPPPAAE
CCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
GSTVTWNEGQLNQSELEIVSVLDRHKDQVDSLSFDQLDAKINDPSTQPDLKKALQGLQKD
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCC
PRLFFAIGSQKDGKCGGKIKAQDLTDFSYYHPQIAEYNDKQAKSYTQNYIASDSPDKTKA
CCEEEEECCCCCCCCCCEEECCCCCCHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCHHHH
SVMTKSDALRELYRYSDYLPGNLSEDEFAKIVDGDSKTGKCPPQVIAAAQYFRDHPDEWK
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHH
EFAGDSGSMSTPDFLQKSTSEMHLTADEQKTLDTINSHQDAFYGDGKEITRDKLDAISKD
HHCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
DKADPAVKQAATQLLADPLLFGLLNNSITGYKKPHHFFGGGHVVDSGKISQDDFRQFYDH
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
MSAANKTVDTPATHEASSPDQQKAVADMLVGKDDPPAIKKPKKDVGTFQQGLHEFLKWDS
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KILDWMSVGLSALNGIPIIGEIADAASIALESEAQAAQVVDTAIQGGDMSLALKLAGINM
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH
AGAVVGAVGGPTARIGAKGVAKGVAEAAAKEAAEGAAKGAAKGTAKSVAKGGGKTAAERP
HHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
SAAEFAKGYVGGTAISKSTEILKTPVLAGLHYEEYQLDKQKDGEIHQKMENAGGVPVGKQ
CHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCHH
IIPKGIADNFEGDLRQNLRNVRIRRR
HHCHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]