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The map label for this gene is pobR [C]

Identifier: 78045924

GI number: 78045924

Start: 420637

End: 421548

Strand: Reverse

Name: pobR [C]

Synonym: XCV0368

Alternate gene names: 78045924

Gene position: 421548-420637 (Counterclockwise)

Preceding gene: 78045926

Following gene: 78045917

Centisome position: 8.14

GC content: 65.9

Gene sequence:

>912_bases
GTGCAGTCCTTGGACTTTTCGACGATGGCCACATCCGTGCCCGACACTGCCGCAGTCCCTGCCTTCGGCTTGTACGGCGA
GCAACACGCCGATGCCGCGGAATTGCTGCATTGGGAATCGATTGCCGCACGCAGCCGGCTGCACGACTGGCAGATCGTGC
CGCACCGACACGAGGATTTGGCGCAACTGGTCTATGTGCAGCGCGGACCGGCCACCCTGCAGCTGGATGGGCGCACCCAA
CGCCTGCGCGGTGCCAGCGTGGTGTGGCTTCCGCCGCTCTGCGTGCATGGCTTTGCCTTCGACCCGGCAGTGCGTGGCCA
CGTCATCACCATGTGCATGCCGCTGGTCAGGACGGCGCTGAACGCTGCGCCGTTACTGCAACAGGTCATGGCCGCGCCAG
CCGTTGTGCACGCCCAGCATGCGCGCAAATGGCTGGATGTGTTGTTTGGCAGCATTGCGCAGGACCACGCACGCCGGTCG
ATCGGCGATGACCTCGCAGCGCAGGCCGCAGCGGCGCAGCTGGTCATCTGGATGGCGCGTACGGCACTGGAACGCGCCCG
GCATGCCGCAGCGATCAGCCCGCAGGCAGACCCGGCGCTGCGCCACCTGCGCGCCTATCAAGGCTTGATCGACCAGCACT
ACCGCGCCCACTGGCCGATTTCCCGCTACGCCGATCAACTCGGGTTGACGCCCGGTCACCTCAACGCGTTATGCCAGCGC
CTGGCTGGCGCCTCCGCACTGCAGTTGTTGCAGCGCAGGATCATGCTGGAAGCACGCCGCACCCTGCGTTACACCAGCCT
GAGCGTGCAACAGATTGCCGCCAGCCTTGGATTTTTCGACGCCGCCTATTTCAGTCGCTACTTCGCACGGCACGCCGGTT
GCTCGCCGACGCGCTTTCGGGCCGGTCAGTAG

Upstream 100 bases:

>100_bases
CGCCGATGATCGCAACCTGCGTTCGCATGCACTGCTCCTGGCCTGGATGGCGATGCGTGCAGTGTCGGTAGCCAAAGCGC
TGCATTGAAGGGATGATTGC

Downstream 100 bases:

>100_bases
GAGCGACCAGCAGAACGACTTCGCTCACTCGCTGCGCGCGTAGCAGGGAGAACGTTCTGCAGACCAGCTGCAGGGTCCTT
GCCCGCCCACCATCGCAGGA

Product: transcriptional regulator PobR

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; AraC-Family Transcriptional Regulator; AraC-Type Transcription Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; Transcription Regulator; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MQSLDFSTMATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQRGPATLQLDGRTQ
RLRGASVVWLPPLCVHGFAFDPAVRGHVITMCMPLVRTALNAAPLLQQVMAAPAVVHAQHARKWLDVLFGSIAQDHARRS
IGDDLAAQAAAAQLVIWMARTALERARHAAAISPQADPALRHLRAYQGLIDQHYRAHWPISRYADQLGLTPGHLNALCQR
LAGASALQLLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRAGQ

Sequences:

>Translated_303_residues
MQSLDFSTMATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQRGPATLQLDGRTQ
RLRGASVVWLPPLCVHGFAFDPAVRGHVITMCMPLVRTALNAAPLLQQVMAAPAVVHAQHARKWLDVLFGSIAQDHARRS
IGDDLAAQAAAAQLVIWMARTALERARHAAAISPQADPALRHLRAYQGLIDQHYRAHWPISRYADQLGLTPGHLNALCQR
LAGASALQLLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRAGQ
>Mature_303_residues
MQSLDFSTMATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQRGPATLQLDGRTQ
RLRGASVVWLPPLCVHGFAFDPAVRGHVITMCMPLVRTALNAAPLLQQVMAAPAVVHAQHARKWLDVLFGSIAQDHARRS
IGDDLAAQAAAAQLVIWMARTALERARHAAAISPQADPALRHLRAYQGLIDQHYRAHWPISRYADQLGLTPGHLNALCQR
LAGASALQLLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRAGQ

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33519; Mature: 33519

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLDFSTMATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDL
CCCCCCHHHHCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AQLVYVQRGPATLQLDGRTQRLRGASVVWLPPLCVHGFAFDPAVRGHVITMCMPLVRTAL
HHHHHHCCCCCEEEECCCHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NAAPLLQQVMAAPAVVHAQHARKWLDVLFGSIAQDHARRSIGDDLAAQAAAAQLVIWMAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALERARHAAAISPQADPALRHLRAYQGLIDQHYRAHWPISRYADQLGLTPGHLNALCQR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
LAGASALQLLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
AGQ
CCC
>Mature Secondary Structure
MQSLDFSTMATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDL
CCCCCCHHHHCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AQLVYVQRGPATLQLDGRTQRLRGASVVWLPPLCVHGFAFDPAVRGHVITMCMPLVRTAL
HHHHHHCCCCCEEEECCCHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NAAPLLQQVMAAPAVVHAQHARKWLDVLFGSIAQDHARRSIGDDLAAQAAAAQLVIWMAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALERARHAAAISPQADPALRHLRAYQGLIDQHYRAHWPISRYADQLGLTPGHLNALCQR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
LAGASALQLLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
AGQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA