BacMap

Definition	Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession	NC_007508
Length	5,178,466

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The map label for this gene is ygfF [C]

Identifier: 78045616

GI number: 78045616

Start: 71505

End: 72242

Strand: Reverse

Name: ygfF [C]

Synonym: XCV0060

Alternate gene names: 78045616

Gene position: 72242-71505 (Counterclockwise)

Preceding gene: 78045619

Following gene: 78045615

Centisome position: 1.4

GC content: 66.26

Gene sequence:

>738_bases
ATGACTCAGCAGCACACTGTTGCAGTGATTACCGGGGCCTCTCGCGGTATTGGCGCTGCCATCGCGCAGCGATTGGCCGG
CGATGGCTTTGCCGTCGTGCTCAACTACGCCGGCCATGCGGATGAGGCCGATCAACTGGTGCGCAGCATCGAAGCGGCCG
GTGGCCGCGCGATCAGCGTGCAGGCCGATGTCAGCGACCCGGTCGCCGTCGAGCGCCTGTTTGCCGCGGCCGAGACTGCG
TTCGGCGGCGTGGATGTGCTGGTCAACAACGCCGGCATCATGCAGCTGGCCACGCTGGCCGACAGCGACGATGCCTTGTT
CGACAAACACATCGCGATCAATCTGAAAGGTACCTTCAACACGCTGCGCCAGGCCGCACGACGGCTGCGCGACGGCGGCC
GCATCGTCAACCTGTCCACCAGCGTGGTCGGCCTGAAGCTGGAAACCTACGGGGTGTATGCGGCCACCAAGGCGGCGGTG
GAAACACTGACGGCGATCCTGTCCAAGGAATTGCGCGGGCGTGCCATCACCGTCAACGCGGTGGCGCCTGGCCCGACCGG
CACGGCGCTGTTCCTGGACGGCAAGTCGCCGGAATTGATCGAACGCTTGTCCAAGGCCAACCCGCTGGAACGTCTTGGCT
GCCCGGACGACATCGCGGCAGCGGTGGCGTTCCTGGTCGGCCCGGATGGCGGCTGGATCAACGGCCAGGTCCTGCGCGCC
AACGGCGGCATGGTCTGA

Upstream 100 bases:

>100_bases
CGCTGGATACAGTGCTGTGCAGTTTAGTGTGATGATCGTCGTGTCATTGCATTGGATAGTTCCGCAACGCCGCAGCCCGC
AGCATAACGGAAGAACATGC

Downstream 100 bases:

>100_bases
CCCGCTGTGGCGCGCGGCAGTGCGCACGCTGCTGGCTTTCCCTCTCAAGGAGCAATGACATGCGCAAACGCATTCTGGTG
ACTGGCGCGTCCAGCGGCTT

Product: short chain dehydrogenase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTQQHTVAVITGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADQLVRSIEAAGGRAISVQADVSDPVAVERLFAAAETA
FGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFNTLRQAARRLRDGGRIVNLSTSVVGLKLETYGVYAATKAAV
ETLTAILSKELRGRAITVNAVAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
NGGMV

Sequences:

>Translated_245_residues
MTQQHTVAVITGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADQLVRSIEAAGGRAISVQADVSDPVAVERLFAAAETA
FGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFNTLRQAARRLRDGGRIVNLSTSVVGLKLETYGVYAATKAAV
ETLTAILSKELRGRAITVNAVAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
NGGMV
>Mature_244_residues
TQQHTVAVITGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADQLVRSIEAAGGRAISVQADVSDPVAVERLFAAAETAF
GGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFNTLRQAARRLRDGGRIVNLSTSVVGLKLETYGVYAATKAAVE
TLTAILSKELRGRAITVNAVAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRAN
GGMV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=36.1111111111111, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.3008130081301, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=33.0645161290323, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI5031737, Length=236, Percent_Identity=33.0508474576271, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=34, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI109715829, Length=235, Percent_Identity=31.4893617021277, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=31.1475409836066, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28.4, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=28.3464566929134, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=32.0610687022901, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254986, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=181, Percent_Identity=34.2541436464088, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI83715985, Length=263, Percent_Identity=31.1787072243346, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4504505, Length=253, Percent_Identity=28.4584980237154, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.2857142857143, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=32.9317269076305, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082100, Length=247, Percent_Identity=34.412955465587, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=31.404958677686, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=32.4894514767932, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789378, Length=240, Percent_Identity=31.25, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.9795918367347, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=32.7800829875519, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=28.6852589641434, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786812, Length=196, Percent_Identity=28.0612244897959, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17536651, Length=247, Percent_Identity=31.5789473684211, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=30.0813008130081, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.258064516129, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=31.4285714285714, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=28.7937743190661, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=30.3643724696356, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=30.8333333333333, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=255, Percent_Identity=29.0196078431373, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=29.0836653386454, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=251, Percent_Identity=28.2868525896414, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=29.7297297297297, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=31.7460317460317, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=213, Percent_Identity=31.4553990610329, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=28.957528957529, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=27.3092369477912, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17558628, Length=186, Percent_Identity=32.258064516129, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=255, Percent_Identity=28.6274509803922, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=255, Percent_Identity=30.1960784313725, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=250, Percent_Identity=28.8, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=251, Percent_Identity=27.8884462151394, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=257, Percent_Identity=29.9610894941634, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.5171102661597, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=240, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=29.3436293436293, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=29.9212598425197, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=204, Percent_Identity=31.3725490196078, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.7709923664122, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=27.5193798449612, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=250, Percent_Identity=29.2, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=33.8624338624339, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=249, Percent_Identity=27.3092369477912, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=34.1463414634146, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=32.3886639676113, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=31.9327731092437, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=29.7959183673469, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=32.520325203252, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI28571387, Length=252, Percent_Identity=32.9365079365079, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24663911, Length=235, Percent_Identity=30.6382978723404, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007234, Length=241, Percent_Identity=29.4605809128631, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24641232, Length=235, Percent_Identity=30.6382978723404, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21357673, Length=186, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=30.6122448979592, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24644337, Length=198, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648693, Length=233, Percent_Identity=31.3304721030043, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355889, Length=233, Percent_Identity=31.3304721030043, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=28.0155642023346, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=34.2391304347826, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281364494, Length=236, Percent_Identity=32.2033898305085, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641388, Length=199, Percent_Identity=32.1608040201005, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007232, Length=191, Percent_Identity=32.9842931937173, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24656154, Length=211, Percent_Identity=30.8056872037915, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19922628, Length=211, Percent_Identity=30.8056872037915, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24648944, Length=248, Percent_Identity=28.2258064516129, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25271; Mature: 25140

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQHTVAVITGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADQLVRSIEAAGGRAISV
CCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
QADVSDPVAVERLFAAAETAFGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFN
EECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEECCCHH
TLRQAARRLRDGGRIVNLSTSVVGLKLETYGVYAATKAAVETLTAILSKELRGRAITVNA
HHHHHHHHHHCCCEEEEEECEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
ECCCCCCEEEEECCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHEEECCCCCEECCEEEEC
NGGMV
CCCCC
>Mature Secondary Structure 
TQQHTVAVITGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADQLVRSIEAAGGRAISV
CCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
QADVSDPVAVERLFAAAETAFGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFN
EECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEECCCHH
TLRQAARRLRDGGRIVNLSTSVVGLKLETYGVYAATKAAVETLTAILSKELRGRAITVNA
HHHHHHHHHHCCCEEEEEECEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
ECCCCCCEEEEECCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHEEECCCCCEECCEEEEC
NGGMV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]