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The map label for this gene is rnpA

Identifier: 78045102

GI number: 78045102

Start: 426

End: 776

Strand: Direct

Name: rnpA

Synonym: CHY_0002

Alternate gene names: 78045102

Gene position: 426-776 (Clockwise)

Preceding gene: 78043997

Following gene: 78043459

Centisome position: 0.02

GC content: 32.76

Gene sequence:

>351_bases
ATGAATAAATGCCGGTTTCTTTCTAAAAACGAAGAATACCGTAATATTTATCAAAATGGCCGTTCCATCGCATCCCGCTA
CTTTGTTGTTTATTATCTAAAAAATGAGGATGAGAAAAAACTGCCCTCTTTTGGAATTTCGGTAAGTAAAAAAATTGGTA
AAGCAGTTGTTCGAAACCGTTTGCGGAGAAGATTAAAAGAAGCTTTAAAAAGGCTTTGCTTTGAATTTTTGCCCGGCTAT
GATTATGTAATTATACCTCGGTTATCCTTTAAAAATGATGAATTTTCTGTGATTTTAGAACAGCTGTTATATATAATTAA
ATTAATGAAGCGGTCGATCGATAATGCGTAA

Upstream 100 bases:

>100_bases
GCGGCTTAAAGGTAGAAAAAGACTTACTGCATAAAGGCCCAACGGGCCTTTATTCTGTATAAGCTTCTCGAATTTGGGAA
ATCCTTTTAAAAGATGTGCT

Downstream 100 bases:

>100_bases
AATTATCTTACTTCTTATTCGCTTTTATCAGAAATTTGTATCTCCTATATTAGGCAGTAATTGTCGTTTTTACCCTTCTT
GTTCCCAGTATACATATGAA

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MNKCRFLSKNEEYRNIYQNGRSIASRYFVVYYLKNEDEKKLPSFGISVSKKIGKAVVRNRLRRRLKEALKRLCFEFLPGY
DYVIIPRLSFKNDEFSVILEQLLYIIKLMKRSIDNA

Sequences:

>Translated_116_residues
MNKCRFLSKNEEYRNIYQNGRSIASRYFVVYYLKNEDEKKLPSFGISVSKKIGKAVVRNRLRRRLKEALKRLCFEFLPGY
DYVIIPRLSFKNDEFSVILEQLLYIIKLMKRSIDNA
>Mature_116_residues
MNKCRFLSKNEEYRNIYQNGRSIASRYFVVYYLKNEDEKKLPSFGISVSKKIGKAVVRNRLRRRLKEALKRLCFEFLPGY
DYVIIPRLSFKNDEFSVILEQLLYIIKLMKRSIDNA

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CARHZ (Q3AG60)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_358874.1
- ProteinModelPortal:   Q3AG60
- SMR:   Q3AG60
- STRING:   Q3AG60
- GeneID:   3728228
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0002
- NMPDR:   fig|246194.3.peg.100
- TIGR:   CHY_0002
- eggNOG:   NOG147903
- HOGENOM:   HBG728160
- OMA:   LYRMANG
- BioCyc:   CHYD246194:CHY_0002-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13910; Mature: 13910

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKCRFLSKNEEYRNIYQNGRSIASRYFVVYYLKNEDEKKLPSFGISVSKKIGKAVVRNR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
LRRRLKEALKRLCFEFLPGYDYVIIPRLSFKNDEFSVILEQLLYIIKLMKRSIDNA
HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKCRFLSKNEEYRNIYQNGRSIASRYFVVYYLKNEDEKKLPSFGISVSKKIGKAVVRNR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
LRRRLKEALKRLCFEFLPGYDYVIIPRLSFKNDEFSVILEQLLYIIKLMKRSIDNA
HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA