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The map label for this gene is gidB

Identifier: 78044839

GI number: 78044839

Start: 5633

End: 6340

Strand: Direct

Name: gidB

Synonym: CHY_0008

Alternate gene names: 78044839

Gene position: 5633-6340 (Clockwise)

Preceding gene: 78043339

Following gene: 78043660

Centisome position: 0.23

GC content: 41.1

Gene sequence:

>708_bases
ATGGAAGCGAAGCTTAAAACTTTTTTTGCCGAGTTTGGACTGTCAATTGAAAAGGAAAAAATCCAGCTTTTTGAACGGTA
TTATCGCTTATTAATATCTGAAAATGAAAAATACAACTTAACAGCGGTAACCGGTGAAGATGAGGTTATCGTAAAGCATT
TTCTTGATAGTACTGCTGTTCTAATTTACCGTGATCTAACGGATTTAAACGCGGTGGATATTGGAACCGGTGCCGGTTTT
CCCGGAATTCCCTTAAAAATTATGGTTCCGGGTTTAAAACTACTGCTTTTGGATTCTTTAAAAAAACGTTGTCTGTTTCT
TGAAAGGGTTGTGCGGGAACTAAATTTAACGAACGTAACGGTAATAAACGAGCGCGCGGAAAACCTTGGACGGCAAAAGC
CGTTTCGGGAACTTTTTGATGTAACCTTTTCCCGGGCTGTTGCTGAGGTTAGAGTCTTACTGGAGTTTCATGCTCCACTT
TTACGCCTGGGGGGAGAAACTATACTGTTCAAAGGTCCCGGGGTCGATGAAGAATTAAAAAAAGCAGAAAAGGCAGCAAA
ACAACTGGGCATGGAGTTAAAAGATGTATATTACTACCGCCTTCCGGGTAACTTTGGAGAGCGCTCACTGGTGGTTTATA
AAAAATTGCAAAATACTCCGGAAAATTATCCTCGGCGTCCGGGTATTCCGGAAAAGAGACCTTTATAA

Upstream 100 bases:

>100_bases
CCGGAAAATATTGGGCAGGCTTCGCGGGTTTCCGGGGTAACTCCAGCCGATATTTCGGTGCTATTAATTTATTTAGAGAG
TAGAAAAAGTGAGGATAACA

Downstream 100 bases:

>100_bases
CTATAAATGTTTCACGTGAAACTTCCGATTGGTCTCAAGATGTATTTTTAAGAAAAATTTAATGTTTCACGTGAAACATC
AAGAAACATTCCCAAAATTA

Product: glucose-inhibited division protein B

Products: NA

Alternate protein names: 16S rRNA 7-methylguanosine methyltransferase; 16S rRNA m7G methyltransferase

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEAKLKTFFAEFGLSIEKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAVLIYRDLTDLNAVDIGTGAGF
PGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINERAENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPL
LRLGGETILFKGPGVDEELKKAEKAAKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL

Sequences:

>Translated_235_residues
MEAKLKTFFAEFGLSIEKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAVLIYRDLTDLNAVDIGTGAGF
PGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINERAENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPL
LRLGGETILFKGPGVDEELKKAEKAAKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL
>Mature_235_residues
MEAKLKTFFAEFGLSIEKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAVLIYRDLTDLNAVDIGTGAGF
PGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINERAENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPL
LRLGGETILFKGPGVDEELKKAEKAAKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL

Specific function: Specifically methylates the N7 position of a guanosine in 16S rRNA

COG id: COG0357

COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA methyltransferase rsmG family

Homologues:

Organism=Escherichia coli, GI1790179, Length=214, Percent_Identity=33.6448598130841, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMG_CARHZ (Q3AG54)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_358880.1
- ProteinModelPortal:   Q3AG54
- SMR:   Q3AG54
- STRING:   Q3AG54
- GeneID:   3727964
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0008
- NMPDR:   fig|246194.3.peg.106
- TIGR:   CHY_0008
- eggNOG:   COG0357
- HOGENOM:   HBG686577
- OMA:   HLWDSLR
- BioCyc:   CHYD246194:CHY_0008-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00074
- InterPro:   IPR003682
- PIRSF:   PIRSF003078
- TIGRFAMs:   TIGR00138

Pfam domain/function: PF02527 GidB

EC number: 2.1.-.- [C]

Molecular weight: Translated: 26918; Mature: 26918

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAKLKTFFAEFGLSIEKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAV
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCEE
LIYRDLTDLNAVDIGTGAGFPGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVT
EEEECCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VINERAENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELK
EEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
KAEKAAKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL
HHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEAKLKTFFAEFGLSIEKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAV
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCEE
LIYRDLTDLNAVDIGTGAGFPGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVT
EEEECCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VINERAENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELK
EEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
KAEKAAKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL
HHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA