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The map label for this gene is sdhB1 [H]

Identifier: 78043987

GI number: 78043987

Start: 615413

End: 616069

Strand: Direct

Name: sdhB1 [H]

Synonym: CHY_0700

Alternate gene names: 78043987

Gene position: 615413-616069 (Clockwise)

Preceding gene: 78044033

Following gene: 78044778

Centisome position: 25.63

GC content: 49.32

Gene sequence:

>657_bases
ATGGATTTACTGGATATCATAGGGCCGGTGATGATTGGGCCCTCCAGCTCCCATACTGCCGGAGCGGTGCGGTTAGGGAG
GGTTGGGCGCCTTGTCTTGGGGGAGGAGCCAAAAAAAGCTAAAATCTTTTTGCACGGCTCCTTCAAAGAAACGTACCGAG
GCCATGGTACCGATCGTGCTATTATTGCCGGTCTTTTGGGCTTTGATACCAGTGATCCCCGTATTCGGGAAAGCTTGAAG
ATTGCCAAAGAACGCGGTTTAAACTATGAATTTTTGCCAATAGATTTGCCGGAAGCTCACCCCAATACTGCTTACATGGA
ACTCTGGGGGGAGACCAGCATTGCGAGGGTTACTGGAAGCTCGATTGGTGGGGGAGCGGTGTTAATTACCGATATTAACG
GGTATCCAGTCAGGATTACGGCCAAATACCCAACATTAATTGTTCCCCATAACGATCAGCCGGGAGCAGTAGCCAAAGTG
ACGTCGGTAATAGCATGGCACGGTATAAACATTGCCCAAATGAGTGTGGCTCGCCAAAAAAAGGGAGCGGAAGCCCTGAT
GGTTATTGAAACAGACCAGCCCATTGACGAAGAAACCTGCAAAGAAATCAAAAGACTGCCCGGAATTACCGGTGGCTTTA
TCATTCCACCCCTTTAA

Upstream 100 bases:

>100_bases
TCCGGTGATACCGGAATTAAAACTTACGGACCTAGGTTTAGTTGATGTCTCTACTTTTTCGGTAGTTCCCGTATCCCTGT
AAAAGGACGGTAGAGAAAAG

Downstream 100 bases:

>100_bases
GGAGGAAGCCGATGTATTTAGAGTCAATTGAGCAGTTAATTAAAATTGCGAAGGAAAATGGCCAAACCTTGGGGCGCATG
GCCTTAATCTTAGAGGCCAA

Product: iron-sulfur-dependent L-serine dehydratase subunit beta

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDLLDIIGPVMIGPSSSHTAGAVRLGRVGRLVLGEEPKKAKIFLHGSFKETYRGHGTDRAIIAGLLGFDTSDPRIRESLK
IAKERGLNYEFLPIDLPEAHPNTAYMELWGETSIARVTGSSIGGGAVLITDINGYPVRITAKYPTLIVPHNDQPGAVAKV
TSVIAWHGINIAQMSVARQKKGAEALMVIETDQPIDEETCKEIKRLPGITGGFIIPPL

Sequences:

>Translated_218_residues
MDLLDIIGPVMIGPSSSHTAGAVRLGRVGRLVLGEEPKKAKIFLHGSFKETYRGHGTDRAIIAGLLGFDTSDPRIRESLK
IAKERGLNYEFLPIDLPEAHPNTAYMELWGETSIARVTGSSIGGGAVLITDINGYPVRITAKYPTLIVPHNDQPGAVAKV
TSVIAWHGINIAQMSVARQKKGAEALMVIETDQPIDEETCKEIKRLPGITGGFIIPPL
>Mature_218_residues
MDLLDIIGPVMIGPSSSHTAGAVRLGRVGRLVLGEEPKKAKIFLHGSFKETYRGHGTDRAIIAGLLGFDTSDPRIRESLK
IAKERGLNYEFLPIDLPEAHPNTAYMELWGETSIARVTGSSIGGGAVLITDINGYPVRITAKYPTLIVPHNDQPGAVAKV
TSVIAWHGINIAQMSVARQKKGAEALMVIETDQPIDEETCKEIKRLPGITGGFIIPPL

Specific function: Unknown

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 23499; Mature: 23499

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLDIIGPVMIGPSSSHTAGAVRLGRVGRLVLGEEPKKAKIFLHGSFKETYRGHGTDRA
CCHHHHHCCEEECCCCCCCCCEEEECCCCEEEECCCCCCEEEEEECCHHHHHCCCCCCHH
IIAGLLGFDTSDPRIRESLKIAKERGLNYEFLPIDLPEAHPNTAYMELWGETSIARVTGS
HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECC
SIGGGAVLITDINGYPVRITAKYPTLIVPHNDQPGAVAKVTSVIAWHGINIAQMSVARQK
CCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
KGAEALMVIETDQPIDEETCKEIKRLPGITGGFIIPPL
CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCC
>Mature Secondary Structure
MDLLDIIGPVMIGPSSSHTAGAVRLGRVGRLVLGEEPKKAKIFLHGSFKETYRGHGTDRA
CCHHHHHCCEEECCCCCCCCCEEEECCCCEEEECCCCCCEEEEEECCHHHHHCCCCCCHH
IIAGLLGFDTSDPRIRESLKIAKERGLNYEFLPIDLPEAHPNTAYMELWGETSIARVTGS
HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECC
SIGGGAVLITDINGYPVRITAKYPTLIVPHNDQPGAVAKVTSVIAWHGINIAQMSVARQK
CCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
KGAEALMVIETDQPIDEETCKEIKRLPGITGGFIIPPL
CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]