| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is ywbL [H]
Identifier: 78043804
GI number: 78043804
Start: 2162830
End: 2163957
Strand: Direct
Name: ywbL [H]
Synonym: CHY_2414
Alternate gene names: 78043804
Gene position: 2162830-2163957 (Clockwise)
Preceding gene: 78043649
Following gene: 78044950
Centisome position: 90.06
GC content: 41.49
Gene sequence:
>1128_bases ATGGTTAAAAGATTTTCTTTAATAGTCGTTATTGTTACCCTGCTTACTTTTGTCTTTACCTTTCCCTCTTTTGCCGAAAA CCCTATCGGAGAGTACCAAAATCTCTTAAAAAGCCTTTATCAAGAAGCCAAAGAAGGTGAATGGGGGGAGGCTCAGGAAC TTGCTTCTAAACTCCAAACTTTTTTTGAAAACGAGGAAAAAGAAATTAAAGAATTAAGCCCAAAACTTTATGAAGAATCG GAAGAATATTTGCCAAAAATTATCAAGTACGCTTCTAAAAAAGACTTCGAAGAGCTTTCCGAGTACTATGAGAAATTAAC AGGAGCTTTTCCCTCCAGTGAAAAGAAAGAAGGTTTTGCCGGTCTTTTTGATAGCGCTTTGATAATTCTCAGGGAAGGAT TTGAAGCTTTTCTAATCATAGGCGCGCTCTGGGCGTTTTTGCAAAAAGCCGGACAGGAAAACCTTAAAGGAAGTCTTATC CTGGGTGCAGTTACAGGAGTAGCCGGTAGCATTGCTGTTGCTTTTTTCCTCCTATCCGCTGCCGGTAAAGCTCTACCTCC AGCGGCATTAGAAGGTTTATCCTCGATTATTGCAGCAGCTCTTCTTTTTTATGTAAGTTTCTGGCTTCTTTCCAAAGCAA GCACCCACAGGTGGGAAGAGTTCATTAAAAATACCGCAAACCAGGCTTTAATCAGGAAAAGCTACTGGTCCTTTTTCGGC GTCTCATTTTTGGCGGTATTTCGGGAGGGTTTTGAAACTGTATTATTTTACACCGCTCTCTACCACCAGGTAAGCCCCTC AGGCTTCTGGAGCGGGCTTATTTCCGGTGCCCTTGGTCTTGTAGTATTAGTTTTTGCCATCGTTAAGCTCGGGGTAAAGA TACCCCTTCGTCCCTTTTTCCTGGCTACCGGAATCCTCCTCTATTATCTAACCATTAAATTTGCCGGTTACGGCGTTCAT GAGCTGGCAGAAATAGGCTGGATTTCGGAAACCAAGCTGGGTAATTTTAGCTTAAGCTTGCTTGGTTTTTACCCCACTTT AGAAAATTTAATTGTTCAGGGAATTCTGTTAGTAATAGGTATTTATGGAATTGGTAAAATCTTAACCAATCCCCCACAAG CCACTTAA
Upstream 100 bases:
>100_bases CTAAAATTCGCCGCTGAACTTAATTCACCTTCTTGACTATTCCGATTTTTTTACTTATAATTAAATTGAAAATGATTTTC AATTTCAAGGAGGTTTTTCT
Downstream 100 bases:
>100_bases ATAATTTTGAAAGGCGGCCAATGCCGCCTTTTTTCTTTGCAAAGGTGAAATTTAAAGAAATTTTTAGCAATAATTCATTT TTTAGTTTTAACCATTATTT
Product: FTR1 family iron permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MVKRFSLIVVIVTLLTFVFTFPSFAENPIGEYQNLLKSLYQEAKEGEWGEAQELASKLQTFFENEEKEIKELSPKLYEES EEYLPKIIKYASKKDFEELSEYYEKLTGAFPSSEKKEGFAGLFDSALIILREGFEAFLIIGALWAFLQKAGQENLKGSLI LGAVTGVAGSIAVAFFLLSAAGKALPPAALEGLSSIIAAALLFYVSFWLLSKASTHRWEEFIKNTANQALIRKSYWSFFG VSFLAVFREGFETVLFYTALYHQVSPSGFWSGLISGALGLVVLVFAIVKLGVKIPLRPFFLATGILLYYLTIKFAGYGVH ELAEIGWISETKLGNFSLSLLGFYPTLENLIVQGILLVIGIYGIGKILTNPPQAT
Sequences:
>Translated_375_residues MVKRFSLIVVIVTLLTFVFTFPSFAENPIGEYQNLLKSLYQEAKEGEWGEAQELASKLQTFFENEEKEIKELSPKLYEES EEYLPKIIKYASKKDFEELSEYYEKLTGAFPSSEKKEGFAGLFDSALIILREGFEAFLIIGALWAFLQKAGQENLKGSLI LGAVTGVAGSIAVAFFLLSAAGKALPPAALEGLSSIIAAALLFYVSFWLLSKASTHRWEEFIKNTANQALIRKSYWSFFG VSFLAVFREGFETVLFYTALYHQVSPSGFWSGLISGALGLVVLVFAIVKLGVKIPLRPFFLATGILLYYLTIKFAGYGVH ELAEIGWISETKLGNFSLSLLGFYPTLENLIVQGILLVIGIYGIGKILTNPPQAT >Mature_375_residues MVKRFSLIVVIVTLLTFVFTFPSFAENPIGEYQNLLKSLYQEAKEGEWGEAQELASKLQTFFENEEKEIKELSPKLYEES EEYLPKIIKYASKKDFEELSEYYEKLTGAFPSSEKKEGFAGLFDSALIILREGFEAFLIIGALWAFLQKAGQENLKGSLI LGAVTGVAGSIAVAFFLLSAAGKALPPAALEGLSSIIAAALLFYVSFWLLSKASTHRWEEFIKNTANQALIRKSYWSFFG VSFLAVFREGFETVLFYTALYHQVSPSGFWSGLISGALGLVVLVFAIVKLGVKIPLRPFFLATGILLYYLTIKFAGYGVH ELAEIGWISETKLGNFSLSLLGFYPTLENLIVQGILLVIGIYGIGKILTNPPQAT
Specific function: Unknown
COG id: COG0672
COG function: function code P; High-affinity Fe2+/Pb2+ permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005217 - InterPro: IPR004923 [H]
Pfam domain/function: PF03239 FTR1 [H]
EC number: NA
Molecular weight: Translated: 41561; Mature: 41561
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKRFSLIVVIVTLLTFVFTFPSFAENPIGEYQNLLKSLYQEAKEGEWGEAQELASKLQT CCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH FFENEEKEIKELSPKLYEESEEYLPKIIKYASKKDFEELSEYYEKLTGAFPSSEKKEGFA HHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHH GLFDSALIILREGFEAFLIIGALWAFLQKAGQENLKGSLILGAVTGVAGSIAVAFFLLSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AGKALPPAALEGLSSIIAAALLFYVSFWLLSKASTHRWEEFIKNTANQALIRKSYWSFFG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSFLAVFREGFETVLFYTALYHQVSPSGFWSGLISGALGLVVLVFAIVKLGVKIPLRPFF HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LATGILLYYLTIKFAGYGVHELAEIGWISETKLGNFSLSLLGFYPTLENLIVQGILLVIG HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IYGIGKILTNPPQAT HHHHHHHHCCCCCCC >Mature Secondary Structure MVKRFSLIVVIVTLLTFVFTFPSFAENPIGEYQNLLKSLYQEAKEGEWGEAQELASKLQT CCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH FFENEEKEIKELSPKLYEESEEYLPKIIKYASKKDFEELSEYYEKLTGAFPSSEKKEGFA HHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHH GLFDSALIILREGFEAFLIIGALWAFLQKAGQENLKGSLILGAVTGVAGSIAVAFFLLSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AGKALPPAALEGLSSIIAAALLFYVSFWLLSKASTHRWEEFIKNTANQALIRKSYWSFFG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSFLAVFREGFETVLFYTALYHQVSPSGFWSGLISGALGLVVLVFAIVKLGVKIPLRPFF HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LATGILLYYLTIKFAGYGVHELAEIGWISETKLGNFSLSLLGFYPTLENLIVQGILLVIG HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IYGIGKILTNPPQAT HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]