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The map label for this gene is gerKA [H]

Identifier: 78043444

GI number: 78043444

Start: 292211

End: 293809

Strand: Direct

Name: gerKA [H]

Synonym: CHY_0336

Alternate gene names: 78043444

Gene position: 292211-293809 (Clockwise)

Preceding gene: 78044302

Following gene: 78044044

Centisome position: 12.17

GC content: 46.34

Gene sequence:

>1599_bases
ATGGGATTATGGGTAAAAATTACAAAAATTTTTAAGGGTAAGGGAAACAGTTCATCTTTTAAAGAAGAAAAGCCAACCAG
GCTTTCGCAGTATAAAGAAAAAAAGTTTTCCGGTAAAGTGGAGGTAGATGTTGGTGAAATAAAAAAAATCCTCGGTAATC
CTTCGGATCTTTTAATAAGGGAGTTTAGCTATTACGGGGTTGCGGCGGCGGCGGTAATGATTGATGGTTTGGTGGATAAA
ATGGTGGTTATTGATGGGATTTTAAAGCCTTTGATGGTTGAAGCCAAAATTGCCCGGGAAAAGCCCGCTGACCCTTATAA
AAGTTTGAAAGAAGAAATGCTGGCTATTGCGGAAATTAAAGAGGTTCAAACCCTGGACGAGTTTCTGCTGGCGGTGCTGT
CCGGTGAAGTCGGGCTTCTTCTGGAAAATTGTTCGGTGGCCCTTTTGGCCAGCGCCAAGGGCTGGGCAAGCCGGTCGGTG
ACCGAGCCGATGAATGAAGTGGTGGTGCGGGGCCCGCAGGAAGGTTTTACCGAAACTATCCGGGTAAATACAACCTTAAT
CCGGCGGCGGGTCCGTTCGCCCTACCTCCGGTTTGAAGCTTTAAAAATCGGGCGGATTTCCCAGACCGATGTGGTAATAG
CGTATCTCGAAGACATTGCTAATCCCCAAATTGTGGAGGAAGTACGGAATAGGCTTTCCCGGATTGATGTGGATGCTATT
TTAGAAAGCGGTTATATTGAAGAGTTTATAGAGGACGATCCCTTTAACATCTTTCCCCAGATTAAACATACCGAGCGACC
CGATAAAGCGGTAGCGGATTTGTTAGAGGGAAAGGTGGTAATTTTAACCGACGGAACTCCTTTAGCCTTGATAGTACCGG
CTACCTTTCCCGAGTTCTTTCAAGCGGCGGAAGATTATTATGAAAAATATTTCATCGGAAACTTTTTACGCTTAATTCGC
GTTTTAGCTTTTTTTATTGCTATGTTTTTACCTTCCCTTTACATTGCTATTATTACCTATCACCAGGAAATGATTCCAAC
GGAACTTTTAATAAATATCTGGGCTTCCCGCTCGGGCGTACCTTTTCCTGCTTTTGTTGAAGCGTTAATTATGGAGATTG
CCTTTGAAGCTCTCAGGGAAGCGGGGGTGCGCCTGCCGCGTCCCGTTGGTCAGGCGGTGAGTATCGTTGGAGCATTAATA
ATCGGGCAGGCGGCAGTTGAAGCGGGAATTGTATCTACTTCCATGGTTATTACCGTTGCCATTACCGGAATTGCTTCCTT
TGCCATTCCGGCTTTTAACATGGCCGTAGCGGCCCGGATTTACCGCTTTGGGATGATGGTTTTAGCGGCAACTTTTGGCA
TGTTCGGACTGATGATGGGCTTTATCCTTTTAGTTATCATGCTTTGCAATACCCGTTCCTTTGGCGTTCCTTACCTGGCC
CCGATAGCACCCTTAAGCATTCCCGACCAGCGGGACGTTGTTGTAAGATTGCCCCGGTGGCTTATGGTCAAGAGGCCCAA
ACACTTTCGTCCACTGGATGAGCGGCGGATAAAAGAAGGATTAAGACCGGGCTTTCCGAAAGGGGAAAAAAGGAGATGA

Upstream 100 bases:

>100_bases
TAGCTGTTTTTACCGACCACTGACCACCGACGACTTACGACCGTTAATGCATATTCTTTTCGCTTTTCCTCAATACTATA
AAGAGGAAAGGAGGGACAAA

Downstream 100 bases:

>100_bases
AAAGAACCTTAGCGGCTTTGTTAATTATCGGGCAAATTTTCTTTTTTGGCTGTTGGAGCAGAATGGAATTAGAAGATTTA
GCAATTGTGCAGGGCGTAGG

Product: spore germination protein GerKA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 531

Protein sequence:

>532_residues
MGLWVKITKIFKGKGNSSSFKEEKPTRLSQYKEKKFSGKVEVDVGEIKKILGNPSDLLIREFSYYGVAAAAVMIDGLVDK
MVVIDGILKPLMVEAKIAREKPADPYKSLKEEMLAIAEIKEVQTLDEFLLAVLSGEVGLLLENCSVALLASAKGWASRSV
TEPMNEVVVRGPQEGFTETIRVNTTLIRRRVRSPYLRFEALKIGRISQTDVVIAYLEDIANPQIVEEVRNRLSRIDVDAI
LESGYIEEFIEDDPFNIFPQIKHTERPDKAVADLLEGKVVILTDGTPLALIVPATFPEFFQAAEDYYEKYFIGNFLRLIR
VLAFFIAMFLPSLYIAIITYHQEMIPTELLINIWASRSGVPFPAFVEALIMEIAFEALREAGVRLPRPVGQAVSIVGALI
IGQAAVEAGIVSTSMVITVAITGIASFAIPAFNMAVAARIYRFGMMVLAATFGMFGLMMGFILLVIMLCNTRSFGVPYLA
PIAPLSIPDQRDVVVRLPRWLMVKRPKHFRPLDERRIKEGLRPGFPKGEKRR

Sequences:

>Translated_532_residues
MGLWVKITKIFKGKGNSSSFKEEKPTRLSQYKEKKFSGKVEVDVGEIKKILGNPSDLLIREFSYYGVAAAAVMIDGLVDK
MVVIDGILKPLMVEAKIAREKPADPYKSLKEEMLAIAEIKEVQTLDEFLLAVLSGEVGLLLENCSVALLASAKGWASRSV
TEPMNEVVVRGPQEGFTETIRVNTTLIRRRVRSPYLRFEALKIGRISQTDVVIAYLEDIANPQIVEEVRNRLSRIDVDAI
LESGYIEEFIEDDPFNIFPQIKHTERPDKAVADLLEGKVVILTDGTPLALIVPATFPEFFQAAEDYYEKYFIGNFLRLIR
VLAFFIAMFLPSLYIAIITYHQEMIPTELLINIWASRSGVPFPAFVEALIMEIAFEALREAGVRLPRPVGQAVSIVGALI
IGQAAVEAGIVSTSMVITVAITGIASFAIPAFNMAVAARIYRFGMMVLAATFGMFGLMMGFILLVIMLCNTRSFGVPYLA
PIAPLSIPDQRDVVVRLPRWLMVKRPKHFRPLDERRIKEGLRPGFPKGEKRR
>Mature_531_residues
GLWVKITKIFKGKGNSSSFKEEKPTRLSQYKEKKFSGKVEVDVGEIKKILGNPSDLLIREFSYYGVAAAAVMIDGLVDKM
VVIDGILKPLMVEAKIAREKPADPYKSLKEEMLAIAEIKEVQTLDEFLLAVLSGEVGLLLENCSVALLASAKGWASRSVT
EPMNEVVVRGPQEGFTETIRVNTTLIRRRVRSPYLRFEALKIGRISQTDVVIAYLEDIANPQIVEEVRNRLSRIDVDAIL
ESGYIEEFIEDDPFNIFPQIKHTERPDKAVADLLEGKVVILTDGTPLALIVPATFPEFFQAAEDYYEKYFIGNFLRLIRV
LAFFIAMFLPSLYIAIITYHQEMIPTELLINIWASRSGVPFPAFVEALIMEIAFEALREAGVRLPRPVGQAVSIVGALII
GQAAVEAGIVSTSMVITVAITGIASFAIPAFNMAVAARIYRFGMMVLAATFGMFGLMMGFILLVIMLCNTRSFGVPYLAP
IAPLSIPDQRDVVVRLPRWLMVKRPKHFRPLDERRIKEGLRPGFPKGEKRR

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 59391; Mature: 59260

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLWVKITKIFKGKGNSSSFKEEKPTRLSQYKEKKFSGKVEVDVGEIKKILGNPSDLLIR
CCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHHHHH
EFSYYGVAAAAVMIDGLVDKMVVIDGILKPLMVEAKIAREKPADPYKSLKEEMLAIAEIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EVQTLDEFLLAVLSGEVGLLLENCSVALLASAKGWASRSVTEPMNEVVVRGPQEGFTETI
HHHHHHHHHHHHHCCCHHEEECCCCEEEEECCCCCCCCCHHCCHHHHHCCCCCCCCHHEE
RVNTTLIRRRVRSPYLRFEALKIGRISQTDVVIAYLEDIANPQIVEEVRNRLSRIDVDAI
EHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHH
LESGYIEEFIEDDPFNIFPQIKHTERPDKAVADLLEGKVVILTDGTPLALIVPATFPEFF
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHH
QAAEDYYEKYFIGNFLRLIRVLAFFIAMFLPSLYIAIITYHQEMIPTELLINIWASRSGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PFPAFVEALIMEIAFEALREAGVRLPRPVGQAVSIVGALIIGQAAVEAGIVSTSMVITVA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITGIASFAIPAFNMAVAARIYRFGMMVLAATFGMFGLMMGFILLVIMLCNTRSFGVPYLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PIAPLSIPDQRDVVVRLPRWLMVKRPKHFRPLDERRIKEGLRPGFPKGEKRR
CCCCCCCCCCCCHHHHCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GLWVKITKIFKGKGNSSSFKEEKPTRLSQYKEKKFSGKVEVDVGEIKKILGNPSDLLIR
CCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHHHHH
EFSYYGVAAAAVMIDGLVDKMVVIDGILKPLMVEAKIAREKPADPYKSLKEEMLAIAEIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EVQTLDEFLLAVLSGEVGLLLENCSVALLASAKGWASRSVTEPMNEVVVRGPQEGFTETI
HHHHHHHHHHHHHCCCHHEEECCCCEEEEECCCCCCCCCHHCCHHHHHCCCCCCCCHHEE
RVNTTLIRRRVRSPYLRFEALKIGRISQTDVVIAYLEDIANPQIVEEVRNRLSRIDVDAI
EHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHH
LESGYIEEFIEDDPFNIFPQIKHTERPDKAVADLLEGKVVILTDGTPLALIVPATFPEFF
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHH
QAAEDYYEKYFIGNFLRLIRVLAFFIAMFLPSLYIAIITYHQEMIPTELLINIWASRSGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PFPAFVEALIMEIAFEALREAGVRLPRPVGQAVSIVGALIIGQAAVEAGIVSTSMVITVA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITGIASFAIPAFNMAVAARIYRFGMMVLAATFGMFGLMMGFILLVIMLCNTRSFGVPYLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PIAPLSIPDQRDVVVRLPRWLMVKRPKHFRPLDERRIKEGLRPGFPKGEKRR
CCCCCCCCCCCCHHHHCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]