| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is spoIIE [H]
Identifier: 78042785
GI number: 78042785
Start: 176242
End: 178641
Strand: Direct
Name: spoIIE [H]
Synonym: CHY_0212
Alternate gene names: 78042785
Gene position: 176242-178641 (Clockwise)
Preceding gene: 78043933
Following gene: 78043578
Centisome position: 7.34
GC content: 43.79
Gene sequence:
>2400_bases TTGGAAACCAAGATCTATCCCTTTGCCCGTAGAAAGAGTAATGTAAAAGCCCCGGAGGTTAAAAGGCCGCGTAAAAAATT GAAACTTAGTGACATAATTTTTCCGGTTTTAGCCTTTTCTTTGGGAAGAGCTTCGCTGGCGGGAGACCTTTATCCCTTTG GGCCGGCGTTTTTAGGAGCGGCGGTCGCTTATCTGGGACTGGGGGAAGCTTTTTTTCTATTTGTTTTCCTTTTATTAGGA CAAATCTTTATTATACCCGAGCGTTATATAATTTATAAGTTTTCGCAGCTTTTGGTACTGTTTATTTTAGCGGGAATACT TCTTAAAAACTTAAATTTCAAGAAAAAGACCGTTGTTTTACCGCTGGTGGTTTTTTGCGTTGTTGCTTTTTTTGGCGTAT ATTTTGATAAAGCCTTTTCCGGCACCCCTTTGGATTTTATCAAAATTGGCCTTGATGCTTCTTTTTCAGCAATTTTAAGT GTGGTATTTTTCCTGGCTTTTCCGGCTTTAAAAGGCGGCCCGGGTAAAATTGTAACCGGCGAAGAACTGTTGCCTTTAAT GTTTGTAATTGGCTCGGCTTTGATAGGCTTTCCCGGGTTTTTCCTTGGTCCCTTAGAAGTTAAACAAACCATTATTCATC TTACAGTGCTTCTTACCGCCTTTTCCGGTGGCCCGGGCCTTGGAGCGGCCGGTGGGGCGGTTTTAGGGGTAATATTATGT TTTGGTAACGGCCTTCCTTTAGAAAATATAGGAATCTACACCTTTGCCGGTTTACTTTCCGGCATCTTTCGCCAGTTCGG TAAAATTGGCGCTTTAATTGGTTTTTTGTTAGCAGATGTGGTGTTGGCTTTTTACTTGCAAAGCCTTTCAGCGGCCAAAG GGCTTGCCTACCAAATGCTGGCTGCTTCCGGAATATTTTTACTCATACCTAACCGGTACCTTGACGGATTAAAGGAAATG CTGGACAGCGTTACCAAGAAATTTCAGTTGTTTATGAACCAGCCCCGGGAAATTGCCCGGGAAAGGATGAATGAATGCCG GGAACTGTTTTTGGACCTGGGAAATTCTTTTTTAGAACTGTCAGCAACGTTAGGGCCGGAAGTAATTCCGGAGTTTCGGA TAGAAGAGGTAGTGGAGCGCTTTCCCAAAGATACCTGCCAGAATTGCACTTTTACCCGGCTTTGCTGGGAGCGAGAGTTT TTTGGAACTTACCATGCGCTACTGGAAATGCTCACAATCCTGGAAAATAAGGGGCAATTATTTAAATCGGATGTTCCGGG GTTTTTTTACAAGCGCTGTCTTAGAATCAAGGAATTTTTAAACGAGCTTCTTTTTACCTTCCTCATGGAAAAAGAAAAAA GTCGCTGGCAGAAAAAACTTTATGAAGAAGAGCAGCTGACCAAAAGCCAGCTCAAGGGTGTGGGAGAAATCTTTTTGGAA TTAAATAAGGCTTTGGATCTGGATTTTGTTTATGATCAAAAAAATACGGTAAAAATTTTTAAAAGACTTTGGGAAGAAAA CCTACCGGTGGAAACGGTTCTGGCCAAACCCACCGGTGGAAGGGGGATGGTCGTAGAAGTTAAATCTGCAAGGTGTTCAG GAACTAAGCCTTGCCTGAACAAAATTCCGGTAATCTTACGGGAAGAAACCGGAGGAGAGTTTGTTCTTCAACAAAAACGG TGTGGTCAGACCGATGGAGGAGAATGTCACTTAAATTACTTGCCTATGGAAGATTTAGAGGGTAGAATTGGTATAGGAAT GGCGGGAAAAACCGGAGAAAAGGTGTCGGGCGATAGTTACCGGGTGGTGCGGTACTCCCCGGGAAAACTGGCGGTAATGC TGTCCGATGGTATGGGCAGCGGGGAGCTGGCCCGCAGGGAGAGCAGTGCCTGCCTGTTAATGGTCGAAAGACTTTTATCC TTTGGTTTAAGTCCGTCGAAAGCGTTAGAAGCGGTAGATGCCCTGATCCGTTTAAAAAACCGGCAGGAACGGTACTTAAC TTTAGATCTTGCTTTGATTGATTTAATAAGCCGTCAGGTAACTTTTTATAAACGGGGAGCGGTTACCTCCTTTTTAAAAA GAGGGGCGGTAGTTGAAAAAATTACCGGGGAAAATTTACCCCTGGGGAGTGGAATTGAGCTTAAGCCCAGGGAAAAACGG CAAATATTATTTCCCGGAGATATTTTAGTGCTGATGAGCGATGGGCTTTTAGAAGCTTTAGGGGGAGAAGAGCGGGTGGT GAAAATTCTTTTGGAAGACAATGATTTATCCCCCGAGATTTTAGCCGAGTATTTCCTTGCCCATGCCAAATTACGCCACC AGAATGTCATTACCGATGACCAGACGGTAATTGTGGTTCGTTTCTTTGAAAAGACAAGGAGTGAACGGGTTGTACGCTAA
Upstream 100 bases:
>100_bases GTCGAAAGAAAATAAAGGGCCAAAACTTTAAAATGACAAAAATTTCCTCCTTGCAAGGCTATAATAACCATTAGAAGCCT TGGAAAAAGGAGGATTTTTT
Downstream 100 bases:
>100_bases GTTTGTTAAAACCGTACAAAAATATCAGATGATTAATCCCGGAGAGAAAGTAGTGGTAGGGGTATCGGGTGGCCCCGACT CCATGGCTCTCCTTTTTTGT
Product: putative stage II sporulation protein E
Products: NA
Alternate protein names: Stage II sporulation protein H [H]
Number of amino acids: Translated: 799; Mature: 799
Protein sequence:
>799_residues METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDLYPFGPAFLGAAVAYLGLGEAFFLFVFLLLG QIFIIPERYIIYKFSQLLVLFILAGILLKNLNFKKKTVVLPLVVFCVVAFFGVYFDKAFSGTPLDFIKIGLDASFSAILS VVFFLAFPALKGGPGKIVTGEELLPLMFVIGSALIGFPGFFLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILC FGNGLPLENIGIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQMLAASGIFLLIPNRYLDGLKEM LDSVTKKFQLFMNQPREIARERMNECRELFLDLGNSFLELSATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREF FGTYHALLEMLTILENKGQLFKSDVPGFFYKRCLRIKEFLNELLFTFLMEKEKSRWQKKLYEEEQLTKSQLKGVGEIFLE LNKALDLDFVYDQKNTVKIFKRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLNKIPVILREETGGEFVLQQKR CGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSYRVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLS FGLSPSKALEAVDALIRLKNRQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEKITGENLPLGSGIELKPREKR QILFPGDILVLMSDGLLEALGGEERVVKILLEDNDLSPEILAEYFLAHAKLRHQNVITDDQTVIVVRFFEKTRSERVVR
Sequences:
>Translated_799_residues METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDLYPFGPAFLGAAVAYLGLGEAFFLFVFLLLG QIFIIPERYIIYKFSQLLVLFILAGILLKNLNFKKKTVVLPLVVFCVVAFFGVYFDKAFSGTPLDFIKIGLDASFSAILS VVFFLAFPALKGGPGKIVTGEELLPLMFVIGSALIGFPGFFLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILC FGNGLPLENIGIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQMLAASGIFLLIPNRYLDGLKEM LDSVTKKFQLFMNQPREIARERMNECRELFLDLGNSFLELSATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREF FGTYHALLEMLTILENKGQLFKSDVPGFFYKRCLRIKEFLNELLFTFLMEKEKSRWQKKLYEEEQLTKSQLKGVGEIFLE LNKALDLDFVYDQKNTVKIFKRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLNKIPVILREETGGEFVLQQKR CGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSYRVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLS FGLSPSKALEAVDALIRLKNRQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEKITGENLPLGSGIELKPREKR QILFPGDILVLMSDGLLEALGGEERVVKILLEDNDLSPEILAEYFLAHAKLRHQNVITDDQTVIVVRFFEKTRSERVVR >Mature_799_residues METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDLYPFGPAFLGAAVAYLGLGEAFFLFVFLLLG QIFIIPERYIIYKFSQLLVLFILAGILLKNLNFKKKTVVLPLVVFCVVAFFGVYFDKAFSGTPLDFIKIGLDASFSAILS VVFFLAFPALKGGPGKIVTGEELLPLMFVIGSALIGFPGFFLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILC FGNGLPLENIGIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQMLAASGIFLLIPNRYLDGLKEM LDSVTKKFQLFMNQPREIARERMNECRELFLDLGNSFLELSATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREF FGTYHALLEMLTILENKGQLFKSDVPGFFYKRCLRIKEFLNELLFTFLMEKEKSRWQKKLYEEEQLTKSQLKGVGEIFLE LNKALDLDFVYDQKNTVKIFKRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLNKIPVILREETGGEFVLQQKR CGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSYRVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLS FGLSPSKALEAVDALIRLKNRQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEKITGENLPLGSGIELKPREKR QILFPGDILVLMSDGLLEALGGEERVVKILLEDNDLSPEILAEYFLAHAKLRHQNVITDDQTVIVVRFFEKTRSERVVR
Specific function: Normally needed for pro-sigma E processing during sporulation but can be bypassed in vegetative cells. Activates spoIIAA by dephosphorylation [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein. Note=Polar septum [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001932 - InterPro: IPR014221 - InterPro: IPR010822 [H]
Pfam domain/function: PF07228 SpoIIE [H]
EC number: =3.1.3.16 [H]
Molecular weight: Translated: 89114; Mature: 89114
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDLYPFGPAFLGA CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHH AVAYLGLGEAFFLFVFLLLGQIFIIPERYIIYKFSQLLVLFILAGILLKNLNFKKKTVVL HHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH PLVVFCVVAFFGVYFDKAFSGTPLDFIKIGLDASFSAILSVVFFLAFPALKGGPGKIVTG HHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECH EELLPLMFVIGSALIGFPGFFLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILC HHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH FGNGLPLENIGIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQML HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AASGIFLLIPNRYLDGLKEMLDSVTKKFQLFMNQPREIARERMNECRELFLDLGNSFLEL HHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH SATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREFFGTYHALLEMLTILENKGQL HHHCCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH FKSDVPGFFYKRCLRIKEFLNELLFTFLMEKEKSRWQKKLYEEEQLTKSQLKGVGEIFLE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNKALDLDFVYDQKNTVKIFKRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLN HHHHCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHH KIPVILREETGGEFVLQQKRCGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSY CCCEEEEECCCCCEEEEHHHCCCCCCCEEEEEECCHHHCCCCEEECCCCCCCCCCCCCCE RVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLSFGLSPSKALEAVDALIRLKN EEEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC RQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEKITGENLPLGSGIELKPREKR CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC QILFPGDILVLMSDGLLEALGGEERVVKILLEDNDLSPEILAEYFLAHAKLRHQNVITDD EEECCCCEEEEECCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC QTVIVVRFFEKTRSERVVR CEEEEEEEHHHHHHCCCCC >Mature Secondary Structure METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDLYPFGPAFLGA CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHH AVAYLGLGEAFFLFVFLLLGQIFIIPERYIIYKFSQLLVLFILAGILLKNLNFKKKTVVL HHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH PLVVFCVVAFFGVYFDKAFSGTPLDFIKIGLDASFSAILSVVFFLAFPALKGGPGKIVTG HHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECH EELLPLMFVIGSALIGFPGFFLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILC HHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH FGNGLPLENIGIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQML HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AASGIFLLIPNRYLDGLKEMLDSVTKKFQLFMNQPREIARERMNECRELFLDLGNSFLEL HHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH SATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREFFGTYHALLEMLTILENKGQL HHHCCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH FKSDVPGFFYKRCLRIKEFLNELLFTFLMEKEKSRWQKKLYEEEQLTKSQLKGVGEIFLE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNKALDLDFVYDQKNTVKIFKRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLN HHHHCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHH KIPVILREETGGEFVLQQKRCGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSY CCCEEEEECCCCCEEEEHHHCCCCCCCEEEEEECCHHHCCCCEEECCCCCCCCCCCCCCE RVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLSFGLSPSKALEAVDALIRLKN EEEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC RQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEKITGENLPLGSGIELKPREKR CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC QILFPGDILVLMSDGLLEALGGEERVVKILLEDNDLSPEILAEYFLAHAKLRHQNVITDD EEECCCCEEEEECCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC QTVIVVRFFEKTRSERVVR CEEEEEEEHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8830262; 9384377; 2832371; 8113187; 7570023 [H]