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The map label for this gene is cph2 [H]

Identifier: 77748680

GI number: 77748680

Start: 3397431

End: 3398915

Strand: Direct

Name: cph2 [H]

Synonym: XAC2897

Alternate gene names: 77748680

Gene position: 3397431-3398915 (Clockwise)

Preceding gene: 21243612

Following gene: 21243633

Centisome position: 65.64

GC content: 66.13

Gene sequence:

>1485_bases
GTGACGTCAACAACCAAGCGGCGGCGCCAACGTGCTCAGCGCATCGCGCTGCATTTCGTGCTGACTGCGTCTTGGATGCT
ACTGCTCGGTTCGGAATATTGGTCCATCCACGAAGAGCGCGCGACCGCGCTGCGCAGCGCCCAGGCGCAGTCGTTGAACC
TGGCCAATTCGCTGGCGCAGCATGCCAGCGACACCCTGTCCATCGCCGACGCAGTGCTGTCCGGGCTGGTGTCGCGGGTC
GAACACGACCAAGGCTCCAGGGCCGCGCGTTCTGCGATGCATGAGTTCCTGGTGCACGAAGCGCGCCGCTCCGATCGCCT
ACATGGCATTTTCATCTATGCCGCGGACGGCAGTTGGGTTAGCTCGTCGCTGGGCAGCACCCCCAGGACGCACAACAACG
CCGACCGCGCCTATTTCAAATACCACCGCGACCATCGCGACGCCTTGTCGCTGGTCGGCCCGCCTGTGCAAAGCCGTTCG
GACGGCTCCTGGGTGCTGACATTGAGCCGCCGCCTCGACGCCCCCAGCGGCGAGTTCGCCGGCGTGGTGCTGGTCACCCT
GCAGCTGAAGTATTTCCAGAACTACTACAGCACCTTCGAGGTCGGCCCGCACGGCACCATCGGCATGACCAACGACGATG
GCATCGTGATGGTGCGCCGGCCCGACAAACAGGGCGTGATCGGCACCTCGATCGCGGGGACGTCGATCTACGTGACCATG
CGCGCACGCAAGCACGGCACCGCCACCTATCGCTCGCCGATCGACCGCGTTGAGCGCATCTCCAGCTTCGCACCGGCGCG
CCCCTATCCGCTGACCGTGCTGACCGGCTTTTCAGTGGACGATGCGTTGGCGAACTGGCGGGAAACCGCGCGCCAGCGCA
TCGTGGTGGCCGCGCTGGGCTGCACCCTGCTGCTGGGCGTGGGGATCTGGCTGGACCTGCAACTGCGCCGCATGCACCGC
AACGAAGCCAAGCTGAGTACCGAAGCCTGGGTAGACGCATTGACCGGCATCGCCAACCGGCGCGCCTTCGACCACCGGCT
ATCGCGTGCGTTGCAGGACGCGGTTCGCCTGGAGGCGCCATTGTCGGTGCTGATGATCGATGTCGATCACTTCAAGCTCT
ACAACGACACCTATGGTCACGTGAACGGCGATGCCTGCCTGCGTTTGATCGCAGGCGCCATTGCCGGCTGCTCGCGCCGC
AGCGAAGACCTCGCCGCGCGCTACGGCGGCGAAGAGTTCGGCATGATCCTGCCGCATACCGATGCCGCCGGCGCGCTGCG
CCTGGCCGACGCCGTGCGCAATGCGGTCGCCGAGCTGGGCCTGATGCACCTGTCCAGCCCCACCAGCGCGCACGTCACCG
TCAGCATCGGCGCAGCCACCTTCGAACCGGGCGAAGCGCCGCTGAGCCCCAACGCCATCGTGCACGACGCCGATTCGGCG
CTGTATCGCGCCAAGCAGAAGGGACGCAATCGCACGTCTGCCTAG

Upstream 100 bases:

>100_bases
GATCTGTCATTGCACGTGTCGACGCGCCTGGGAATGCATGCCGCGACGCGTAGGGTGGCACGGCGGTTGCATCGCTCTGG
TATCCAGACAGGTAGCCACA

Downstream 100 bases:

>100_bases
ACCTGCCGAGGGGCGCTAACGGCCTGCCGTAGGGATCACGCTGCTGCTGCGCGCTGGACGTTGCGAGCTTGAGCAACGCA
TGGACGGCGCGCCCACGCTG

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MTSTTKRRRQRAQRIALHFVLTASWMLLLGSEYWSIHEERATALRSAQAQSLNLANSLAQHASDTLSIADAVLSGLVSRV
EHDQGSRAARSAMHEFLVHEARRSDRLHGIFIYAADGSWVSSSLGSTPRTHNNADRAYFKYHRDHRDALSLVGPPVQSRS
DGSWVLTLSRRLDAPSGEFAGVVLVTLQLKYFQNYYSTFEVGPHGTIGMTNDDGIVMVRRPDKQGVIGTSIAGTSIYVTM
RARKHGTATYRSPIDRVERISSFAPARPYPLTVLTGFSVDDALANWRETARQRIVVAALGCTLLLGVGIWLDLQLRRMHR
NEAKLSTEAWVDALTGIANRRAFDHRLSRALQDAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRR
SEDLAARYGGEEFGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAIVHDADSA
LYRAKQKGRNRTSA

Sequences:

>Translated_494_residues
MTSTTKRRRQRAQRIALHFVLTASWMLLLGSEYWSIHEERATALRSAQAQSLNLANSLAQHASDTLSIADAVLSGLVSRV
EHDQGSRAARSAMHEFLVHEARRSDRLHGIFIYAADGSWVSSSLGSTPRTHNNADRAYFKYHRDHRDALSLVGPPVQSRS
DGSWVLTLSRRLDAPSGEFAGVVLVTLQLKYFQNYYSTFEVGPHGTIGMTNDDGIVMVRRPDKQGVIGTSIAGTSIYVTM
RARKHGTATYRSPIDRVERISSFAPARPYPLTVLTGFSVDDALANWRETARQRIVVAALGCTLLLGVGIWLDLQLRRMHR
NEAKLSTEAWVDALTGIANRRAFDHRLSRALQDAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRR
SEDLAARYGGEEFGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAIVHDADSA
LYRAKQKGRNRTSA
>Mature_493_residues
TSTTKRRRQRAQRIALHFVLTASWMLLLGSEYWSIHEERATALRSAQAQSLNLANSLAQHASDTLSIADAVLSGLVSRVE
HDQGSRAARSAMHEFLVHEARRSDRLHGIFIYAADGSWVSSSLGSTPRTHNNADRAYFKYHRDHRDALSLVGPPVQSRSD
GSWVLTLSRRLDAPSGEFAGVVLVTLQLKYFQNYYSTFEVGPHGTIGMTNDDGIVMVRRPDKQGVIGTSIAGTSIYVTMR
ARKHGTATYRSPIDRVERISSFAPARPYPLTVLTGFSVDDALANWRETARQRIVVAALGCTLLLGVGIWLDLQLRRMHRN
EAKLSTEAWVDALTGIANRRAFDHRLSRALQDAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRS
EDLAARYGGEEFGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAIVHDADSAL
YRAKQKGRNRTSA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=41.6149068322981, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=40.5714285714286, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=39.8809523809524, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=33.8383838383838, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=36.3095238095238, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=34.5238095238095, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=138, Percent_Identity=37.6811594202899, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081974, Length=185, Percent_Identity=33.5135135135135, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=33.8888888888889, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=30.8988764044944, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=31.9767441860465, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=207, Percent_Identity=26.5700483091787, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54142; Mature: 54011

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTTKRRRQRAQRIALHFVLTASWMLLLGSEYWSIHEERATALRSAQAQSLNLANSLAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HASDTLSIADAVLSGLVSRVEHDQGSRAARSAMHEFLVHEARRSDRLHGIFIYAADGSWV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHH
SSSLGSTPRTHNNADRAYFKYHRDHRDALSLVGPPVQSRSDGSWVLTLSRRLDAPSGEFA
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCC
GVVLVTLQLKYFQNYYSTFEVGPHGTIGMTNDDGIVMVRRPDKQGVIGTSIAGTSIYVTM
EEEHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCEEEEEE
RARKHGTATYRSPIDRVERISSFAPARPYPLTVLTGFSVDDALANWRETARQRIVVAALG
EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
CTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQDAVRLEAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEFGMILPHT
CEEEEEEEHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCC
DAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAIVHDADSA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCCCCCCCCCCEEECCHHH
LYRAKQKGRNRTSA
HHHHHHHCCCCCCC
>Mature Secondary Structure 
TSTTKRRRQRAQRIALHFVLTASWMLLLGSEYWSIHEERATALRSAQAQSLNLANSLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HASDTLSIADAVLSGLVSRVEHDQGSRAARSAMHEFLVHEARRSDRLHGIFIYAADGSWV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHH
SSSLGSTPRTHNNADRAYFKYHRDHRDALSLVGPPVQSRSDGSWVLTLSRRLDAPSGEFA
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCC
GVVLVTLQLKYFQNYYSTFEVGPHGTIGMTNDDGIVMVRRPDKQGVIGTSIAGTSIYVTM
EEEHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCEEEEEE
RARKHGTATYRSPIDRVERISSFAPARPYPLTVLTGFSVDDALANWRETARQRIVVAALG
EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
CTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQDAVRLEAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEFGMILPHT
CEEEEEEEHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCC
DAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAIVHDADSA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCCCCCCCCCCEEECCHHH
LYRAKQKGRNRTSA
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]