| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is nfdA [H]
Identifier: 77748632
GI number: 77748632
Start: 2532952
End: 2534637
Strand: Reverse
Name: nfdA [H]
Synonym: XAC2163
Alternate gene names: 77748632
Gene position: 2534637-2532952 (Counterclockwise)
Preceding gene: 21242899
Following gene: 21242897
Centisome position: 48.97
GC content: 63.58
Gene sequence:
>1686_bases ATGAGCCGCATGCCAGGCAAGCACGATGCCGGACGGCGCTTGTGGATGCAGGGCGCCGCAGCCGGTCTTGCGTTGGGTGC ATTGCCGGCTGCTTCGTCTGCATCAGGGAAGTCTTCAATGGTCGATCTCGTCGTTCGCAATGCGCGCATCACCACGCTCG ATCCGCGCCAGCCCAACGCTACTGCCATCGCCGTTGCCGATGGGCGCATCGTGGCAGTCGGCGACGATGCGCAGATCATG GCCTTGGCAAAGGGCGCGCGCACCATCGATGCGCAGGGGCGACGTCTGCTGCCCGGCCTCAACGACAGCCACACGCACCT GATCCGTGGTGGTCTGAATTACAACCTGGAGCTGCGCTGGGATGGCGTGCGCTCGCTGGCCGATGCAATGGCGATGCTGA AGGCGCAGGTCGATCGCACGCCAGCGCCGCAGTGGGTGCGCGTGGTCGGCGGTTTCACTGCGTATCAATTCGCTGAAAAA CGCCTGCCCACGCTTGAGGAGATCAACGCCATCGCGCCGGAAACGCCGGTGTTTCTGTTGCATCTGTACGATCGTGCCTT ACTCAATCGCGCCGCGCTGCGAGCCTGCGGCTACGACAAGACCACTCCGGATCCGCCGGGCGGGCGCATCGAGCGCGACA AGTTGGGCAACCCCACGGGTCTGCTGCTGGCCAAGCCCAACGCGTTGATCCTTTACGCAAGCCTGGCCAAAGGCCCGCGC CTGCCGCTGGAATACCAGGCCAACTCCACTCGCCATTTCATGCGCGAGCTCAACCGGCTCGGGGTCACCTCGGTGATCGA TGCCGGCGGTGGTTTCCAGAACTATCCGGAGGATTACCAGGTCATCGAACAGCTGCACGCGGCCGATCAACTGAGCGTGC GTATTGCCTATAACCTGTTCACCCAGAACAAGGGCAGGGAGGTCGAAGACTTCCGCGGCTGGACCGAAGTACTGCCGTTA CGCAAGGGCGATGACCTGCTGCGTCACAACGGCGCCGGCGAGATGCTGGTATTTTCCGCTGCAGACTTCGAACAATTCAG CGAGCCGCGCCCGGAGCTGCCGGCGGAGCTGGAACCCGAGCTGGAGCAAGTGGTGCGGCTGCTGGTGGAAAAGCGCTGGC CATTCCGTATCCATGCAACATACGACGAAAGCATCGCGCGCATTCTCGATGTCTACGAAAAGGTCAACGCCGACATCCCG TTCGATGGCCTGCATTGGTTCATCGACCATGCCGAAACGATTACCCCGCGCAATATCGAGCGCATTCGCGCCTTGAACGG CGGCATCGCCGTGCAACATCGCATGGCCTACCAGGGCGAGGCGTTCGTGCGGCGCTATGGCGTGCAGGCTGCAAGGCAGA CGCCGCCAGTGCGACGCATGCTCGCAGCGGGAATTCCGGTCGGCGCAGGCACCGATGCCACCCGCGTGGCCAGCTACAAC CCGTGGGTGGCGCTGTCGTGGCTGGTCACCGGCCGCACGGTGGGCGGTCTGGCCCTGTATGGCGACGAGAATCTGCTCGA TCGCGAACAGGCACTGCGGTTGTGGACGCAGGGCAGCGCCTGGTTTTCCGGTGACGAGACCAACAAGGGCACCCTGGCGG CGGGCAGTTGGCCGACTTCATCGTGTTGTCCGACGATTACTTCCGCATCGACGACGCGGCCATCTCCGACATCACCAGCG TGCTGA
Upstream 100 bases:
>100_bases GCGGAATGGAATACCCGCTGATGTGGATGCTGGTGTTGCTGGCACTCGCTGCAGCCGGTGGTGGCGACTGGTCGCTGGAT CGCCTGCGTAGGCGTGTGGC
Downstream 100 bases:
>100_bases CCGTCCTGGGCGGGCGTGTCGTGCATGGCGAGGGCGACTTTGCCGCGCTCGCCCCCACGCTGCCGCCTGCCATGCCGGAT TGGTCGCCGGTGAATCGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 560
Protein sequence:
>561_residues MSRMPGKHDAGRRLWMQGAAAGLALGALPAASSASGKSSMVDLVVRNARITTLDPRQPNATAIAVADGRIVAVGDDAQIM ALAKGARTIDAQGRRLLPGLNDSHTHLIRGGLNYNLELRWDGVRSLADAMAMLKAQVDRTPAPQWVRVVGGFTAYQFAEK RLPTLEEINAIAPETPVFLLHLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR LPLEYQANSTRHFMRELNRLGVTSVIDAGGGFQNYPEDYQVIEQLHAADQLSVRIAYNLFTQNKGREVEDFRGWTEVLPL RKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELPAELEPELEQVVRLLVEKRWPFRIHATYDESIARILDVYEKVNADIP FDGLHWFIDHAETITPRNIERIRALNGGIAVQHRMAYQGEAFVRRYGVQAARQTPPVRRMLAAGIPVGAGTDATRVASYN PWVALSWLVTGRTVGGLALYGDENLLDREQALRLWTQGSAWFSGDETNKGTLAAGSWPTSSCCPTITSASTTRPSPTSPA C
Sequences:
>Translated_561_residues MSRMPGKHDAGRRLWMQGAAAGLALGALPAASSASGKSSMVDLVVRNARITTLDPRQPNATAIAVADGRIVAVGDDAQIM ALAKGARTIDAQGRRLLPGLNDSHTHLIRGGLNYNLELRWDGVRSLADAMAMLKAQVDRTPAPQWVRVVGGFTAYQFAEK RLPTLEEINAIAPETPVFLLHLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR LPLEYQANSTRHFMRELNRLGVTSVIDAGGGFQNYPEDYQVIEQLHAADQLSVRIAYNLFTQNKGREVEDFRGWTEVLPL RKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELPAELEPELEQVVRLLVEKRWPFRIHATYDESIARILDVYEKVNADIP FDGLHWFIDHAETITPRNIERIRALNGGIAVQHRMAYQGEAFVRRYGVQAARQTPPVRRMLAAGIPVGAGTDATRVASYN PWVALSWLVTGRTVGGLALYGDENLLDREQALRLWTQGSAWFSGDETNKGTLAAGSWPTSSCCPTITSASTTRPSPTSPA C >Mature_560_residues SRMPGKHDAGRRLWMQGAAAGLALGALPAASSASGKSSMVDLVVRNARITTLDPRQPNATAIAVADGRIVAVGDDAQIMA LAKGARTIDAQGRRLLPGLNDSHTHLIRGGLNYNLELRWDGVRSLADAMAMLKAQVDRTPAPQWVRVVGGFTAYQFAEKR LPTLEEINAIAPETPVFLLHLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPRL PLEYQANSTRHFMRELNRLGVTSVIDAGGGFQNYPEDYQVIEQLHAADQLSVRIAYNLFTQNKGREVEDFRGWTEVLPLR KGDDLLRHNGAGEMLVFSAADFEQFSEPRPELPAELEPELEQVVRLLVEKRWPFRIHATYDESIARILDVYEKVNADIPF DGLHWFIDHAETITPRNIERIRALNGGIAVQHRMAYQGEAFVRRYGVQAARQTPPVRRMLAAGIPVGAGTDATRVASYNP WVALSWLVTGRTVGGLALYGDENLLDREQALRLWTQGSAWFSGDETNKGTLAAGSWPTSSCCPTITSASTTRPSPTSPAC
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 61538; Mature: 61407
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRMPGKHDAGRRLWMQGAAAGLALGALPAASSASGKSSMVDLVVRNARITTLDPRQPNA CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEECCEEEEECCCCCCC TAIAVADGRIVAVGDDAQIMALAKGARTIDAQGRRLLPGLNDSHTHLIRGGLNYNLELRW CEEEEECCEEEEECCCCEEEEECCCCCEECCCCCEECCCCCCCCCEEEECCCCEEEEEEE DGVRSLADAMAMLKAQVDRTPAPQWVRVVGGFTAYQFAEKRLPTLEEINAIAPETPVFLL CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHCCCCCCCEEHH HLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHCCCCCEEEEECCCEEEEEEECCCCCC LPLEYQANSTRHFMRELNRLGVTSVIDAGGGFQNYPEDYQVIEQLHAADQLSVRIAYNLF CCEEECCCCHHHHHHHHHHCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEE TQNKGREVEDFRGWTEVLPLRKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELPAELEPE ECCCCCCHHHHCCHHHHCCCCCCCHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCHH LEQVVRLLVEKRWPFRIHATYDESIARILDVYEKVNADIPFDGLHWFIDHAETITPRNIE HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHH RIRALNGGIAVQHRMAYQGEAFVRRYGVQAARQTPPVRRMLAAGIPVGAGTDATRVASYN HHHHHCCCEEEEEHHHHCHHHHHHHHCCHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCC PWVALSWLVTGRTVGGLALYGDENLLDREQALRLWTQGSAWFSGDETNKGTLAAGSWPTS CCEEEEEEEECCCCCCEEEECCCCHHCHHHHHHHHCCCCCEECCCCCCCCEEEECCCCCC SCCPTITSASTTRPSPTSPAC CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRMPGKHDAGRRLWMQGAAAGLALGALPAASSASGKSSMVDLVVRNARITTLDPRQPNA CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEECCEEEEECCCCCCC TAIAVADGRIVAVGDDAQIMALAKGARTIDAQGRRLLPGLNDSHTHLIRGGLNYNLELRW CEEEEECCEEEEECCCCEEEEECCCCCEECCCCCEECCCCCCCCCEEEECCCCEEEEEEE DGVRSLADAMAMLKAQVDRTPAPQWVRVVGGFTAYQFAEKRLPTLEEINAIAPETPVFLL CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHCCCCCCCEEHH HLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHCCCCCEEEEECCCEEEEEEECCCCCC LPLEYQANSTRHFMRELNRLGVTSVIDAGGGFQNYPEDYQVIEQLHAADQLSVRIAYNLF CCEEECCCCHHHHHHHHHHCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEE TQNKGREVEDFRGWTEVLPLRKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELPAELEPE ECCCCCCHHHHCCHHHHCCCCCCCHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCHH LEQVVRLLVEKRWPFRIHATYDESIARILDVYEKVNADIPFDGLHWFIDHAETITPRNIE HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHH RIRALNGGIAVQHRMAYQGEAFVRRYGVQAARQTPPVRRMLAAGIPVGAGTDATRVASYN HHHHHCCCEEEEEHHHHCHHHHHHHHCCHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCC PWVALSWLVTGRTVGGLALYGDENLLDREQALRLWTQGSAWFSGDETNKGTLAAGSWPTS CCEEEEEEEECCCCCCEEEECCCCHHCHHHHHHHHCCCCCEECCCCCCCCEEEECCCCCC SCCPTITSASTTRPSPTSPAC CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA