| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is aprX [H]
Identifier: 77748591
GI number: 77748591
Start: 1746205
End: 1748652
Strand: Direct
Name: aprX [H]
Synonym: XAC1512
Alternate gene names: 77748591
Gene position: 1746205-1748652 (Clockwise)
Preceding gene: 21242259
Following gene: 21242265
Centisome position: 33.74
GC content: 65.52
Gene sequence:
>2448_bases ATGGCGACAAGCAAGCCCCCACGTTCGAAACCTGCACGCGCGCTACCGCGCAAGGCTGCTGCAAGCACGCAACAACCGGC GCGGCCGCGCACTGCGCGTGCGCAGCAGGCCGGGGCCCAGGAGTCCGCGGCGACCCGCGTGCAGGGCAAGGCGCGCACGG TGATCTACATCCATGGCATCGGCAACAAGCCGCCGGCTGATGTGCTGCGTTGTCAGTGGGACAAGGCCTTGTTCGGGCGG CCCATGGGCGAGCGTACGCGGCTGGCGTACTGGGTCAATCGCGAGCGCTATCCAGTGGCCGAGCCGGGCAATTGCGATGC GCGCGATGTGGGTCCGGCGCTCAATCAAAGCGTGCAGCGTGCCTTGAGCACGCTTGGCCTGGTGCCGGGCGAACAGGACC TGCACCTGTTGGCAGACGCGCTGGCGCAGAGCGAGCAGGAACGTGCCGATCTGCATCGGCTGCTGGACGAGCTTCAGGGC GCGTCCGTGCGCGGCAGCGTGCAGGCCAAGGGGGCCATCGATGCGATCAACCGGGTGTTGCTGCGGCTGATTTCCGCTGC ATTGTTGCAGGACGTGCATGACCTGTTCTTCGTGCCGGAACGTGCGGCGCTGATGCGCGAAAGTCTGGCGCAGCGGCTGC GTGCAGGCGGCGGGCCATTCGTGGTGGTGGCGCACAGCCAGGGTTCGATGATCGCCTTCGATGTGCTGCGCCAGCTGAAG GCTGCCGACTGCGAGGTCAGTTTGTTCCTCACCCTGGGCTCGCCACTGGGGTTGCCGCAGGTGCGGAGCATGTTCAAGCG CTGGACCGGCACGCGCAAACTGCCGTTCCCCGGGTGCGTACAGCGCTGGATCAATGTGACCGAAACGCGCGACCCGATCG CGCTGGACCCGGACCTCACCGACGACATCGCCAATGCAAAAGGACGTTTCGAAAACCTGGCCGCTGCGCGCTTGAATCCG GACTGGCAGCACAACCCGCATTCGGCTTCGGGCTATCTGTCGATTCCGCAGGTGCGCGCCGCGGTGCGCCAAGCCGTGGG TGTGGGCTTCGATCAGCCGGTGTCCAATGCAGTGCTGATCAAGGACCTCAGCGAGCAGCTCGAAGCGCATGGCCCGGAGC ACCGACACGATGTGCTGATCGAGCTGGATCGGCGCGTGTTGGGTAACGACCCTGCCGGTGCGCGCGCATTGCTGTTGCAG CATGTGCGCCAAGCCGCTGCGCGCACCACCGGCTTGAGTGGTGATGCGCTGGATGAGGCGATCGAGCTGGAAGACAGCCT GCAGCGTTTCGTGTCTGCGCGGCTCACCCGATTCGAGATCGAATCGCTGCAGGATCGCTATCGCACATTGGGCTTTCGGC GGGTGTGGCGCAATGCCGGAAAACGCGCGTTGATCCATGTGTCGGGCAATGTCCTGCATGCCGATGCGGCACGCACGGCG TATCGCGCGCGCGGGCAGCAGATCGGTTGGGCGGTGATGGATACCGGCATCGCGGCCGGTCACCCGCATTTTTTCCTCAA GGGTGAGCGCGACAACGTGGTGGCACAGTGGGATTGCACGCGGCGCGGTGCGCCCAAACGGCTGACCCGCGCCGACGGCA CTGCGTTTACCCGGCTCGATCGGCATGGGCACGGCACGCATATCGCCGGCATCATCGCCGGGCAGTGTCGCGCTTCGATC CCGGATGCGAGCGGCACGCCCGGCCGTACGCTTGAATTTTCCGGCATGGCGCCGGATACGCAGCTGTATGGCTTCAAGGT ACTCGACGATGCCGGAAACGGCCGCGACTCGTGGACGATCAAGGCGGTGCAGCAGGTGGCCGACATCAACGAGCGCGCCG GCGAGCTGGTCATCCATGGCGTCAATCTGAGCCTAGGCGGCTGCTTCGACCCGGAGAGCTACGGCTGTGGGTTTACGCCG TTGTGCAATGAATTACGCCGGCTGTGGCGGCAAGGCGTGCTGGTGGTGATCGCTGCCGGCAACGAGGGCCTGGCCTGGTT GATGCGCAACGATGGCGATGCGTATGCGGCCAACATGGATCTGTCGATCAGCGACCCGGGCAACCTGGAAGACGCCATCG TGGTCGGCTCGGTGCACAAGAGCAGCCCACACAACTATGGCGTGTCGTATTTTTCCTCGCGCGGGCCGACTGCCGACGGC CGCAGCAAGCCGGATGTGGTCGCGCCAGGGGAGAAGATCCTGTCGGCCTACTACGACTTCGACCCAGGCGACCCGGCCGG CCTGATGGTGGAGATGAGCGGCACCAGCATGGCCGCACCGCATGTCTCCGGCGTGCTGGCGGGTTTCCTATCGGCGCGCC GCGAGTTCATCGGCTTCCCCGATCGGGTTAAGCAACTGCTGCTGGATACCTGTACCGACCTGCAGCGCGACCGCTATGTG CAGGGCAGGGGAGTGCCGAATGTGATGCGGATGCTTGGAGCGACGTGA
Upstream 100 bases:
>100_bases GGGATCGGCGCGCCCTGTCACAAGTGGTGAGATGCGCAACGCTTACAGTGGCTTCAGTCCCGTACCGAACGGAACAGTCT GCAAACGAAGGAGCGAAGCG
Downstream 100 bases:
>100_bases TTCGGGAAGCGGCAGTGGGGAGTCGGGAATCGTAAAAGCGACCAGCATCCACGACCTCAGCTCGTGCTCAGCCGGCTATA TCGCTGCCGCTGCGGGAAAG
Product: serine peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 815; Mature: 814
Protein sequence:
>815_residues MATSKPPRSKPARALPRKAAASTQQPARPRTARAQQAGAQESAATRVQGKARTVIYIHGIGNKPPADVLRCQWDKALFGR PMGERTRLAYWVNRERYPVAEPGNCDARDVGPALNQSVQRALSTLGLVPGEQDLHLLADALAQSEQERADLHRLLDELQG ASVRGSVQAKGAIDAINRVLLRLISAALLQDVHDLFFVPERAALMRESLAQRLRAGGGPFVVVAHSQGSMIAFDVLRQLK AADCEVSLFLTLGSPLGLPQVRSMFKRWTGTRKLPFPGCVQRWINVTETRDPIALDPDLTDDIANAKGRFENLAAARLNP DWQHNPHSASGYLSIPQVRAAVRQAVGVGFDQPVSNAVLIKDLSEQLEAHGPEHRHDVLIELDRRVLGNDPAGARALLLQ HVRQAAARTTGLSGDALDEAIELEDSLQRFVSARLTRFEIESLQDRYRTLGFRRVWRNAGKRALIHVSGNVLHADAARTA YRARGQQIGWAVMDTGIAAGHPHFFLKGERDNVVAQWDCTRRGAPKRLTRADGTAFTRLDRHGHGTHIAGIIAGQCRASI PDASGTPGRTLEFSGMAPDTQLYGFKVLDDAGNGRDSWTIKAVQQVADINERAGELVIHGVNLSLGGCFDPESYGCGFTP LCNELRRLWRQGVLVVIAAGNEGLAWLMRNDGDAYAANMDLSISDPGNLEDAIVVGSVHKSSPHNYGVSYFSSRGPTADG RSKPDVVAPGEKILSAYYDFDPGDPAGLMVEMSGTSMAAPHVSGVLAGFLSARREFIGFPDRVKQLLLDTCTDLQRDRYV QGRGVPNVMRMLGAT
Sequences:
>Translated_815_residues MATSKPPRSKPARALPRKAAASTQQPARPRTARAQQAGAQESAATRVQGKARTVIYIHGIGNKPPADVLRCQWDKALFGR PMGERTRLAYWVNRERYPVAEPGNCDARDVGPALNQSVQRALSTLGLVPGEQDLHLLADALAQSEQERADLHRLLDELQG ASVRGSVQAKGAIDAINRVLLRLISAALLQDVHDLFFVPERAALMRESLAQRLRAGGGPFVVVAHSQGSMIAFDVLRQLK AADCEVSLFLTLGSPLGLPQVRSMFKRWTGTRKLPFPGCVQRWINVTETRDPIALDPDLTDDIANAKGRFENLAAARLNP DWQHNPHSASGYLSIPQVRAAVRQAVGVGFDQPVSNAVLIKDLSEQLEAHGPEHRHDVLIELDRRVLGNDPAGARALLLQ HVRQAAARTTGLSGDALDEAIELEDSLQRFVSARLTRFEIESLQDRYRTLGFRRVWRNAGKRALIHVSGNVLHADAARTA YRARGQQIGWAVMDTGIAAGHPHFFLKGERDNVVAQWDCTRRGAPKRLTRADGTAFTRLDRHGHGTHIAGIIAGQCRASI PDASGTPGRTLEFSGMAPDTQLYGFKVLDDAGNGRDSWTIKAVQQVADINERAGELVIHGVNLSLGGCFDPESYGCGFTP LCNELRRLWRQGVLVVIAAGNEGLAWLMRNDGDAYAANMDLSISDPGNLEDAIVVGSVHKSSPHNYGVSYFSSRGPTADG RSKPDVVAPGEKILSAYYDFDPGDPAGLMVEMSGTSMAAPHVSGVLAGFLSARREFIGFPDRVKQLLLDTCTDLQRDRYV QGRGVPNVMRMLGAT >Mature_814_residues ATSKPPRSKPARALPRKAAASTQQPARPRTARAQQAGAQESAATRVQGKARTVIYIHGIGNKPPADVLRCQWDKALFGRP MGERTRLAYWVNRERYPVAEPGNCDARDVGPALNQSVQRALSTLGLVPGEQDLHLLADALAQSEQERADLHRLLDELQGA SVRGSVQAKGAIDAINRVLLRLISAALLQDVHDLFFVPERAALMRESLAQRLRAGGGPFVVVAHSQGSMIAFDVLRQLKA ADCEVSLFLTLGSPLGLPQVRSMFKRWTGTRKLPFPGCVQRWINVTETRDPIALDPDLTDDIANAKGRFENLAAARLNPD WQHNPHSASGYLSIPQVRAAVRQAVGVGFDQPVSNAVLIKDLSEQLEAHGPEHRHDVLIELDRRVLGNDPAGARALLLQH VRQAAARTTGLSGDALDEAIELEDSLQRFVSARLTRFEIESLQDRYRTLGFRRVWRNAGKRALIHVSGNVLHADAARTAY RARGQQIGWAVMDTGIAAGHPHFFLKGERDNVVAQWDCTRRGAPKRLTRADGTAFTRLDRHGHGTHIAGIIAGQCRASIP DASGTPGRTLEFSGMAPDTQLYGFKVLDDAGNGRDSWTIKAVQQVADINERAGELVIHGVNLSLGGCFDPESYGCGFTPL CNELRRLWRQGVLVVIAAGNEGLAWLMRNDGDAYAANMDLSISDPGNLEDAIVVGSVHKSSPHNYGVSYFSSRGPTADGR SKPDVVAPGEKILSAYYDFDPGDPAGLMVEMSGTSMAAPHVSGVLAGFLSARREFIGFPDRVKQLLLDTCTDLQRDRYVQ GRGVPNVMRMLGAT
Specific function: Displays serine protease activity. Seems to have a broad substrate specificity [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasm (Probable). Note=Is leaked to the culture medium during the late stationary phase owing to cell lysis [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Homo sapiens, GI4506775, Length=335, Percent_Identity=28.3582089552239, Blast_Score=77, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6320775, Length=323, Percent_Identity=27.8637770897833, Blast_Score=73, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324576, Length=399, Percent_Identity=26.8170426065163, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI45550681, Length=352, Percent_Identity=26.7045454545455, Blast_Score=84, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 88659; Mature: 88527
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSKPPRSKPARALPRKAAASTQQPARPRTARAQQAGAQESAATRVQGKARTVIYIHGI CCCCCCCCCCCHHHCCHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCEEEEEEEEC GNKPPADVLRCQWDKALFGRPMGERTRLAYWVNRERYPVAEPGNCDARDVGPALNQSVQR CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHH ALSTLGLVPGEQDLHLLADALAQSEQERADLHRLLDELQGASVRGSVQAKGAIDAINRVL HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH LRLISAALLQDVHDLFFVPERAALMRESLAQRLRAGGGPFVVVAHSQGSMIAFDVLRQLK HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH AADCEVSLFLTLGSPLGLPQVRSMFKRWTGTRKLPFPGCVQRWINVTETRDPIALDPDLT HCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCHHCCCCCEEECCCCC DDIANAKGRFENLAAARLNPDWQHNPHSASGYLSIPQVRAAVRQAVGVGFDQPVSNAVLI HHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHH KDLSEQLEAHGPEHRHDVLIELDRRVLGNDPAGARALLLQHVRQAAARTTGLSGDALDEA HHHHHHHHHCCCCCHHHHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH IELEDSLQRFVSARLTRFEIESLQDRYRTLGFRRVWRNAGKRALIHVSGNVLHADAARTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECHHHHHH YRARGQQIGWAVMDTGIAAGHPHFFLKGERDNVVAQWDCTRRGAPKRLTRADGTAFTRLD HHHCCCCCCHHHHHCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHH RHGHGTHIAGIIAGQCRASIPDASGTPGRTLEFSGMAPDTQLYGFKVLDDAGNGRDSWTI CCCCCCEEEEEEECCHHCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHHH KAVQQVADINERAGELVIHGVNLSLGGCFDPESYGCGFTPLCNELRRLWRQGVLVVIAAG HHHHHHHHHHHCCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEC NEGLAWLMRNDGDAYAANMDLSISDPGNLEDAIVVGSVHKSSPHNYGVSYFSSRGPTADG CCCEEEEEECCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCHHCCCCCCCCCC RSKPDVVAPGEKILSAYYDFDPGDPAGLMVEMSGTSMAAPHVSGVLAGFLSARREFIGFP CCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCH DRVKQLLLDTCTDLQRDRYVQGRGVPNVMRMLGAT HHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHCCC >Mature Secondary Structure ATSKPPRSKPARALPRKAAASTQQPARPRTARAQQAGAQESAATRVQGKARTVIYIHGI CCCCCCCCCCHHHCCHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCEEEEEEEEC GNKPPADVLRCQWDKALFGRPMGERTRLAYWVNRERYPVAEPGNCDARDVGPALNQSVQR CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHH ALSTLGLVPGEQDLHLLADALAQSEQERADLHRLLDELQGASVRGSVQAKGAIDAINRVL HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH LRLISAALLQDVHDLFFVPERAALMRESLAQRLRAGGGPFVVVAHSQGSMIAFDVLRQLK HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH AADCEVSLFLTLGSPLGLPQVRSMFKRWTGTRKLPFPGCVQRWINVTETRDPIALDPDLT HCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCHHCCCCCEEECCCCC DDIANAKGRFENLAAARLNPDWQHNPHSASGYLSIPQVRAAVRQAVGVGFDQPVSNAVLI HHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHH KDLSEQLEAHGPEHRHDVLIELDRRVLGNDPAGARALLLQHVRQAAARTTGLSGDALDEA HHHHHHHHHCCCCCHHHHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH IELEDSLQRFVSARLTRFEIESLQDRYRTLGFRRVWRNAGKRALIHVSGNVLHADAARTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECHHHHHH YRARGQQIGWAVMDTGIAAGHPHFFLKGERDNVVAQWDCTRRGAPKRLTRADGTAFTRLD HHHCCCCCCHHHHHCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHH RHGHGTHIAGIIAGQCRASIPDASGTPGRTLEFSGMAPDTQLYGFKVLDDAGNGRDSWTI CCCCCCEEEEEEECCHHCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHHH KAVQQVADINERAGELVIHGVNLSLGGCFDPESYGCGFTPLCNELRRLWRQGVLVVIAAG HHHHHHHHHHHCCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEC NEGLAWLMRNDGDAYAANMDLSISDPGNLEDAIVVGSVHKSSPHNYGVSYFSSRGPTADG CCCEEEEEECCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCHHCCCCCCCCCC RSKPDVVAPGEKILSAYYDFDPGDPAGLMVEMSGTSMAAPHVSGVLAGFLSARREFIGFP CCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCH DRVKQLLLDTCTDLQRDRYVQGRGVPNVMRMLGAT HHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]