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The map label for this gene is ygdR [H]

Identifier: 77748587

GI number: 77748587

Start: 1675655

End: 1677220

Strand: Direct

Name: ygdR [H]

Synonym: XAC1450

Alternate gene names: 77748587

Gene position: 1675655-1677220 (Clockwise)

Preceding gene: 21242199

Following gene: 21242203

Centisome position: 32.38

GC content: 63.67

Gene sequence:

>1566_bases
TTGACCACCTCCATCTCGCCAGGCGCATCTGCCGGCGCGCGGCTGCCGCTCCAGATTCCTTTCATCATCGGCAACGAGGC
CTGCGAGCGTTTCAGCTTCTACGGCATGCGCAACATCCTGGTGCAGTTCCTGATCACCTCGCTGTTGCTGCAGGAAATCA
GCGGGCCGGGACGCGAGGCCGAGGCCAAGCACATCCTGCACAGTTTCATGATCGGGGTGTATTTCTTCCCGTTGCTGGGC
GGTTGGCTGGCCGACCGCTTCTCCGGCAAGTACAACACCATTTTGTGGTTCAGCCTGGTGTATTGCGCCGGCCACGCCTG
CCTTGCGCTGTTTGAAGGCAGCCGCGACGGGTTTTTTCTCGGTCTGGGCCTGATCGCGCTGGGCGCAGGCGGCATCAAGC
CGCTGGTGGCGTCGTTCATGGGCGACCAGTTCGACCAGTCCAACAAGCACCTGGCCAAGGTGGTGTTCGACGCTTTCTAC
TGGATCATCAATTTCGGCTCGCTGTTCGCCTCGCTGCTGATTCCGCTGGCGCTGAAGAATCTGAGCCCGGCCTGGGCATT
CGGCATTCCCGGCATCCTGATGTTCGTGGCCACGCTGGTGTTCTGGCTGGGGCGCAAGCGCTATGTGCTGGTGCCGCTGC
CGCCGAAGGACCCACATGGGTTCGCTGCGGTGGTGCGCACCGCGTTACTGACGCACGCGCCGGGGCAGGGGCGCCCGGGC
CTGCTGCTGGCGGTCGTCTCGGTGCTGCTGGCGCTGGCTGGCTTCGCGCTAATCGAGCCATTGGGCATCGTCGTGTGCCT
GTGCATTGCGCTGGTGCTGTTGCTGGCCGGGATCGGCGGCGGGACCTGGTGGCAGCTGGAACGCGCGCGTGGCACCCATC
CGGATGTTGCGGTGGAAGGCGTGCGTGCGCTGTTGCGGGTGTTGGTGATCTTCGCGCTGGTGATGCCGTTCTTTTCGTTG
TTCGACCAGAAGGCCTCGACCTGGGTGCTGCAGGGGCGCGAGATGACCATGCCGGCCTGGTTCACCGCCTCGCAGATGCA
GGCGCTCAATCCGCTGCTGGTGATGCTGCTGATCCCCTTCAACAACCTGGTGCTGTACCCGCTGCTACGCCGTGGCGGCT
GGGAGCCCACCCCGTTGCGCCGCATGACCAGCGGCATCGCCTTCAGTGGCGTGGCCTGGATTGCGGTGGGCGCGATCCAG
ATGATCATGGATGGTGGCGAGCCCATGCACATCGCCTGGCAGATCCTGCCGTACGCACTGCTCACCTTCGGCGAGGTGCT
GGTGTCGGCCACTGGCATCGAGTTCGCCTACAGCCAGGCGCCGCCGTCGATGAAGGGCGTGGTGATGAGTTTCTGGTATC
TCACTACCACCGTCGGCAATCTATGGGTGCTGCTGTCGAACGTGGCGGTGCGCAATGCGACGGTAACCGCGCATATCGCC
GATACTGGACTCAGCGAAGCGGCCTTCTTGATGTTCTTCTTCGCGGCCTTCGCGTTCCTGGCGGCACTTGCCTTCGGCTT
GTACGCACGCCGGTATCGCATGGTCGACAATTACCGTACTGCCTGA

Upstream 100 bases:

>100_bases
TCCGCTCGGTGCCCGCGTCCGGCACTCCCGGGCGGGCGATGGCGGCCGGCGGGTGGGCGCCGGTACGATAGGGCCTGTTT
TCAGCATGACCGGACTGCCT

Downstream 100 bases:

>100_bases
GGTCTGCATGATTACCCTGATCCTGATCGCCATCACCGGCATCGTCTCGTGGATGGCGTTCAACAATCGCAAGTTGAGCG
ACCGGCTGATCCTGTGGCCG

Product: oligopeptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MTTSISPGASAGARLPLQIPFIIGNEACERFSFYGMRNILVQFLITSLLLQEISGPGREAEAKHILHSFMIGVYFFPLLG
GWLADRFSGKYNTILWFSLVYCAGHACLALFEGSRDGFFLGLGLIALGAGGIKPLVASFMGDQFDQSNKHLAKVVFDAFY
WIINFGSLFASLLIPLALKNLSPAWAFGIPGILMFVATLVFWLGRKRYVLVPLPPKDPHGFAAVVRTALLTHAPGQGRPG
LLLAVVSVLLALAGFALIEPLGIVVCLCIALVLLLAGIGGGTWWQLERARGTHPDVAVEGVRALLRVLVIFALVMPFFSL
FDQKASTWVLQGREMTMPAWFTASQMQALNPLLVMLLIPFNNLVLYPLLRRGGWEPTPLRRMTSGIAFSGVAWIAVGAIQ
MIMDGGEPMHIAWQILPYALLTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRNATVTAHIA
DTGLSEAAFLMFFFAAFAFLAALAFGLYARRYRMVDNYRTA

Sequences:

>Translated_521_residues
MTTSISPGASAGARLPLQIPFIIGNEACERFSFYGMRNILVQFLITSLLLQEISGPGREAEAKHILHSFMIGVYFFPLLG
GWLADRFSGKYNTILWFSLVYCAGHACLALFEGSRDGFFLGLGLIALGAGGIKPLVASFMGDQFDQSNKHLAKVVFDAFY
WIINFGSLFASLLIPLALKNLSPAWAFGIPGILMFVATLVFWLGRKRYVLVPLPPKDPHGFAAVVRTALLTHAPGQGRPG
LLLAVVSVLLALAGFALIEPLGIVVCLCIALVLLLAGIGGGTWWQLERARGTHPDVAVEGVRALLRVLVIFALVMPFFSL
FDQKASTWVLQGREMTMPAWFTASQMQALNPLLVMLLIPFNNLVLYPLLRRGGWEPTPLRRMTSGIAFSGVAWIAVGAIQ
MIMDGGEPMHIAWQILPYALLTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRNATVTAHIA
DTGLSEAAFLMFFFAAFAFLAALAFGLYARRYRMVDNYRTA
>Mature_520_residues
TTSISPGASAGARLPLQIPFIIGNEACERFSFYGMRNILVQFLITSLLLQEISGPGREAEAKHILHSFMIGVYFFPLLGG
WLADRFSGKYNTILWFSLVYCAGHACLALFEGSRDGFFLGLGLIALGAGGIKPLVASFMGDQFDQSNKHLAKVVFDAFYW
IINFGSLFASLLIPLALKNLSPAWAFGIPGILMFVATLVFWLGRKRYVLVPLPPKDPHGFAAVVRTALLTHAPGQGRPGL
LLAVVSVLLALAGFALIEPLGIVVCLCIALVLLLAGIGGGTWWQLERARGTHPDVAVEGVRALLRVLVIFALVMPFFSLF
DQKASTWVLQGREMTMPAWFTASQMQALNPLLVMLLIPFNNLVLYPLLRRGGWEPTPLRRMTSGIAFSGVAWIAVGAIQM
IMDGGEPMHIAWQILPYALLTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRNATVTAHIAD
TGLSEAAFLMFFFAAFAFLAALAFGLYARRYRMVDNYRTA

Specific function: Proton-dependent uptake of di- or tri-peptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI226371746, Length=393, Percent_Identity=33.0788804071247, Blast_Score=176, Evalue=5e-44,
Organism=Homo sapiens, GI226371748, Length=385, Percent_Identity=31.4285714285714, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI4827008, Length=431, Percent_Identity=27.8422273781903, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI21717816, Length=489, Percent_Identity=24.7443762781186, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI7706117, Length=523, Percent_Identity=22.5621414913958, Blast_Score=84, Evalue=5e-16,
Organism=Escherichia coli, GI1787922, Length=459, Percent_Identity=24.1830065359477, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790572, Length=193, Percent_Identity=29.5336787564767, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786927, Length=196, Percent_Identity=26.530612244898, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789911, Length=436, Percent_Identity=23.1651376146789, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17569141, Length=407, Percent_Identity=33.4152334152334, Blast_Score=163, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI71987453, Length=410, Percent_Identity=32.9268292682927, Blast_Score=162, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI17541704, Length=419, Percent_Identity=31.0262529832936, Blast_Score=144, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6322946, Length=504, Percent_Identity=24.8015873015873, Blast_Score=103, Evalue=6e-23,
Organism=Drosophila melanogaster, GI28571098, Length=429, Percent_Identity=31.002331002331, Blast_Score=174, Evalue=2e-43,
Organism=Drosophila melanogaster, GI28571102, Length=439, Percent_Identity=30.5239179954442, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI28571100, Length=439, Percent_Identity=30.5239179954442, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24639585, Length=212, Percent_Identity=39.1509433962264, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24639583, Length=212, Percent_Identity=39.1509433962264, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24639581, Length=212, Percent_Identity=39.1509433962264, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24645459, Length=482, Percent_Identity=26.9709543568465, Blast_Score=115, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 56870; Mature: 56739

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSISPGASAGARLPLQIPFIIGNEACERFSFYGMRNILVQFLITSLLLQEISGPGREA
CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
EAKHILHSFMIGVYFFPLLGGWLADRFSGKYNTILWFSLVYCAGHACLALFEGSRDGFFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHH
GLGLIALGAGGIKPLVASFMGDQFDQSNKHLAKVVFDAFYWIINFGSLFASLLIPLALKN
HHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSPAWAFGIPGILMFVATLVFWLGRKRYVLVPLPPKDPHGFAAVVRTALLTHAPGQGRPG
CCCHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCH
LLLAVVSVLLALAGFALIEPLGIVVCLCIALVLLLAGIGGGTWWQLERARGTHPDVAVEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
VRALLRVLVIFALVMPFFSLFDQKASTWVLQGREMTMPAWFTASQMQALNPLLVMLLIPF
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHCC
NNLVLYPLLRRGGWEPTPLRRMTSGIAFSGVAWIAVGAIQMIMDGGEPMHIAWQILPYAL
CHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRNATVTAHIA
HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
DTGLSEAAFLMFFFAAFAFLAALAFGLYARRYRMVDNYRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTSISPGASAGARLPLQIPFIIGNEACERFSFYGMRNILVQFLITSLLLQEISGPGREA
CCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
EAKHILHSFMIGVYFFPLLGGWLADRFSGKYNTILWFSLVYCAGHACLALFEGSRDGFFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHH
GLGLIALGAGGIKPLVASFMGDQFDQSNKHLAKVVFDAFYWIINFGSLFASLLIPLALKN
HHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSPAWAFGIPGILMFVATLVFWLGRKRYVLVPLPPKDPHGFAAVVRTALLTHAPGQGRPG
CCCHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCH
LLLAVVSVLLALAGFALIEPLGIVVCLCIALVLLLAGIGGGTWWQLERARGTHPDVAVEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
VRALLRVLVIFALVMPFFSLFDQKASTWVLQGREMTMPAWFTASQMQALNPLLVMLLIPF
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHCC
NNLVLYPLLRRGGWEPTPLRRMTSGIAFSGVAWIAVGAIQMIMDGGEPMHIAWQILPYAL
CHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LTFGEVLVSATGIEFAYSQAPPSMKGVVMSFWYLTTTVGNLWVLLSNVAVRNATVTAHIA
HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
DTGLSEAAFLMFFFAAFAFLAALAFGLYARRYRMVDNYRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]