| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 77748544
Identifier: 77748544
GI number: 77748544
Start: 740423
End: 740992
Strand: Reverse
Name: 77748544
Synonym: XAC0626
Alternate gene names: NA
Gene position: 740992-740423 (Counterclockwise)
Preceding gene: 21241401
Following gene: 21241394
Centisome position: 14.32
GC content: 63.33
Gene sequence:
>570_bases ATGCGCCTGACCGTTACGATCGCCCTCGCCTTTCTGCTCGTCCTCGGCCTGCCTGCGGCACATGCCAAAGACACGCCCGC CACGGAGCCGGCAATCGATTTGTCCAAGATCATGGGCACCTGGTACGTCATTGCGCGCATGCCCAACGCGGTCGAGCGCG GCCACGTCACCAGCCGCGACGAATACACCCTGGTCGAAGACGGCAAGGTGGCGGTGCGCTATCTGTACCGCGACGGGTTC GGCGAACCGGAAAAGGAAGTCAATGCGCGCGCCTCGGTGGATGCCGACAGCGGCAACCGCGACTGGCGGGTGTGGTTCTA CAAGGTCATCCCGGCCAAGCAGCGCATCCTGGAAATCGCTCCCGACGGCTCCTGGATGCTGATCTCCTACCCTGGCCGCG ACCTGGCCTGGATCTTCTCGCGCAAGCCGGACATGAGCCGCGACCAGTACCGCATGCTGGTCAACAAGATGCGCGACGAC TATTCCATCTATACCGACAAACTCAAGCGGGTGCCGCAGCTGCGCGAGCAGGTGGACCGCCTGGGTTTTGAAGTGCCGAA CAAGCGCTGA
Upstream 100 bases:
>100_bases GCAGATTCCCCGGCTGCCGATGCCAGGCCCGACCGTTGACGCGAACTTGCCCCCTGCATGCGGTAGTGTGCTGCTCCGAC TGCCTCCTTGTGATGTTGCG
Downstream 100 bases:
>100_bases GCGTTCTTGGTCGCACTGGCCATGCGCCGGGTCGGCAGCGCCTCGTCGACCGTCATGCAGATGCGCGCCGCAGCAGCCAC GCGGCGCAGCCATTCACCGC
Product: outer membrane lipoprotein
Products: NA
Alternate protein names: Outer Membrane Lipoprotein; Outer Membrane Lipoprotein Blc; Lipocalin Protein; Lipocalin-Like Protein; Lipocalin-Like Domain; Outer Membrane Lipoprotein Lipocalin Blc Like
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MRLTVTIALAFLLVLGLPAAHAKDTPATEPAIDLSKIMGTWYVIARMPNAVERGHVTSRDEYTLVEDGKVAVRYLYRDGF GEPEKEVNARASVDADSGNRDWRVWFYKVIPAKQRILEIAPDGSWMLISYPGRDLAWIFSRKPDMSRDQYRMLVNKMRDD YSIYTDKLKRVPQLREQVDRLGFEVPNKR
Sequences:
>Translated_189_residues MRLTVTIALAFLLVLGLPAAHAKDTPATEPAIDLSKIMGTWYVIARMPNAVERGHVTSRDEYTLVEDGKVAVRYLYRDGF GEPEKEVNARASVDADSGNRDWRVWFYKVIPAKQRILEIAPDGSWMLISYPGRDLAWIFSRKPDMSRDQYRMLVNKMRDD YSIYTDKLKRVPQLREQVDRLGFEVPNKR >Mature_189_residues MRLTVTIALAFLLVLGLPAAHAKDTPATEPAIDLSKIMGTWYVIARMPNAVERGHVTSRDEYTLVEDGKVAVRYLYRDGF GEPEKEVNARASVDADSGNRDWRVWFYKVIPAKQRILEIAPDGSWMLISYPGRDLAWIFSRKPDMSRDQYRMLVNKMRDD YSIYTDKLKRVPQLREQVDRLGFEVPNKR
Specific function: Unknown
COG id: COG3040
COG function: function code M; Bacterial lipocalin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21836; Mature: 21836
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTVTIALAFLLVLGLPAAHAKDTPATEPAIDLSKIMGTWYVIARMPNAVERGHVTSRD CEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEHHCCCHHHHCCCCCCC EYTLVEDGKVAVRYLYRDGFGEPEKEVNARASVDADSGNRDWRVWFYKVIPAKQRILEIA CEEEEECCCEEEEEEECCCCCCCHHHCCCCEECCCCCCCCCEEEEEEEECCCHHHEEEEC PDGSWMLISYPGRDLAWIFSRKPDMSRDQYRMLVNKMRDDYSIYTDKLKRVPQLREQVDR CCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LGFEVPNKR CCCCCCCCC >Mature Secondary Structure MRLTVTIALAFLLVLGLPAAHAKDTPATEPAIDLSKIMGTWYVIARMPNAVERGHVTSRD CEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEHHCCCHHHHCCCCCCC EYTLVEDGKVAVRYLYRDGFGEPEKEVNARASVDADSGNRDWRVWFYKVIPAKQRILEIA CEEEEECCCEEEEEEECCCCCCCHHHCCCCEECCCCCCCCCEEEEEEEECCCHHHEEEEC PDGSWMLISYPGRDLAWIFSRKPDMSRDQYRMLVNKMRDDYSIYTDKLKRVPQLREQVDR CCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LGFEVPNKR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA