| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is hrpM
Identifier: 77748543
GI number: 77748543
Start: 732331
End: 734268
Strand: Direct
Name: hrpM
Synonym: XAC0618
Alternate gene names: 77748543
Gene position: 732331-734268 (Clockwise)
Preceding gene: 21241386
Following gene: 21241390
Centisome position: 14.15
GC content: 68.01
Gene sequence:
>1938_bases ATGGATGGCACCGTGACTCCTTCCCCGATAACGACTGCAATGCCCCCCGTTTCCGCCCTCGATGCCGGCACGCCAACGCT GCCGCCGGAAGCGCCGCTGGCGATGCCCGAACAGAACTTGCGCGAAGGTAGCCTGCAGGTGCGCCACCAGCGCACTTCGC CGCCCGGCATCGGCGTGCGCCGCTTCTATTTGATCGGCGGCACCTTCGCCACCACCGCCATCGCCGTATGGGTGATGCTC AGCGTGCTGTGGCCCGACGGCATCAGCGTGCTGGAAGGCTGTCTGCTCGGCCTGTTCGTGCTGCTGTTCGCCTGGATCGC CATGTCCTTCGCCAGCGCCGTGGCTGGCTTCGTCACCGTGGTGGCGCGCGCCGGCCGCAAGCTCGGCATCGACCCGGAGC AACCCCTGCCCACGCTGCGCTCGCGCACCGCGTTGCTGATGCCCACCTACAACGAAGACCCGCGCCGGCTGCTGGCTGGC CTGCAGGCCATCTACGAATCGGTCGCCGAGACCGGCCAGCTGGAGCATTTCGATTTCTTCGTGCTCAGCGACACCACCCG CGAGCACATCGGCCGCGCCGAAGAGCTGGTCTACAACGCGTTGTGCGACCGCGTCGGCGGGCACGGCCGCATTTTCTACC GACGCCGTGCCGACAACGCCGCGCGCAAGGCCGGCAACGTGGCCGACTGGGTGCGCCGCTTCGGCGGCAGCTACCCGCAG ATGCTGATCCTGGACGCCGACAGCGTGATGACCGGCGACACCATCGTGCGGCTGGTCGCAGGGATGGAAAACAACCCGGA CGTGGGCTTGATCCAGACCTTGCCGGCAGTGGTCAACGGGCAGACCCTGTTCGCCCGCATGCAGCAGTTCGGCGGCCGCG TGTACGGGCCGATCATCGCCTTCGGTGTGGCCTGGTGGCACGGCGCCGAGAGCAACTACTGGGGCCACAACGCCATCATC CGCACCCAGGCCTTCGCCGATCACGCCGGCCTGCCGTCGCTGCGCGGGCGCAAGCCGTTCGGCGGGCATGTGCTCAGCCA CGACTTCGTGGAAGCGGCGCTGATGCGCCGCGGCGGCTGGGCCATGCACATGGTGCCGTACCTGCAGGGCAGCTACGAAG AAGGCCCGCCCACGCTGACCGACCTGCTGATCCGCGACCGCCGCTGGTGCCAGGGCAACCTGCAGCACGCCAAGGTGGTC GGCGCCAAGGGCCTGCACTGGATCAGCCGCATGCACATGCTGATCGGCATCGGGCATTACTTCACCGCCCCGATGTGGGG TCTGTTGATGCTGATCGGCATCGGCATTCCGCTGGCCGGCGGCGATATCGATCTGGCCGGCGACCTGCCGTTCTCGCCCG CCCGTTACTGGCATGGCAGCAGCCAGGGCAATGCGATCTGGATCTTCGTCTGCACCATGTTCGTGTTGCTGGCGCCCAAG CTGCTCGGTTACATCGCGTTGCTGCTCAACCCGCGCGAACTGCGCGCCTGCGGCGGTGCCTTCCGCGCTGCGGTGAGCAT CCTGCTGGAAACGGTGCTGGCCGCCTTGATGGCGCCGGTGGTGATGTACCTGCAGTCGCGCGGCGTGTTCGAGGTGCTGG CGGGCAAGGATTCGGGCTGGGATGCGCAGGTGCGCGACGACGGCAAGCTGTCGTGGCCGGCGTTGTTGCGCAGCTATGGC GGTCTGACCGTGTTCGGCCTGTTCATGGGTGCGGTGGCCTATGCGGTCTCGCCGGCGCTGGCCGCGTGGATGGGGCCGGT GATCGTTGGCATGGCATTGTCGATCCCGGTGGTGGCGCTGACCTCGCTGCGTCGCACCGGCATGGCGCTGCGCCGTGCCG GTATTTTCTGCATCCCCGAAGAACTCGACCCGCCCAAGGTGCTGGTGCGTGCGTCCGAGCTGCGCCGCGCCGCCGCGCTG GAACCGTCGCTGATCTGA
Upstream 100 bases:
>100_bases TCGCCCGCTCGGCCGTGTGCCAGGCAACATCGCACTGCATGGCGGGGATGGACCTCCCGTGTCAGCCCGCACTGTCGTCC TCGCGCGACGGGCAGCCCTG
Downstream 100 bases:
>100_bases GGAGTGCGCATCGGCGCTGGTCTCGCTGGCCGGCGCTGTTGCGTTGTCGCGTGGAGGAGGCCCGTGGCGATCCGCGGGCC TCAAGCCTCTGGCGCCAGCT
Product: glucosyltransferase MdoH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 645; Mature: 645
Protein sequence:
>645_residues MDGTVTPSPITTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVRRFYLIGGTFATTAIAVWVML SVLWPDGISVLEGCLLGLFVLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEQPLPTLRSRTALLMPTYNEDPRRLLAG LQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYNALCDRVGGHGRIFYRRRADNAARKAGNVADWVRRFGGSYPQ MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVAWWHGAESNYWGHNAII RTQAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGWAMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVV GAKGLHWISRMHMLIGIGHYFTAPMWGLLMLIGIGIPLAGGDIDLAGDLPFSPARYWHGSSQGNAIWIFVCTMFVLLAPK LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGWDAQVRDDGKLSWPALLRSYG GLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVALTSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAAL EPSLI
Sequences:
>Translated_645_residues MDGTVTPSPITTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVRRFYLIGGTFATTAIAVWVML SVLWPDGISVLEGCLLGLFVLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEQPLPTLRSRTALLMPTYNEDPRRLLAG LQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYNALCDRVGGHGRIFYRRRADNAARKAGNVADWVRRFGGSYPQ MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVAWWHGAESNYWGHNAII RTQAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGWAMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVV GAKGLHWISRMHMLIGIGHYFTAPMWGLLMLIGIGIPLAGGDIDLAGDLPFSPARYWHGSSQGNAIWIFVCTMFVLLAPK LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGWDAQVRDDGKLSWPALLRSYG GLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVALTSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAAL EPSLI >Mature_645_residues MDGTVTPSPITTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVRRFYLIGGTFATTAIAVWVML SVLWPDGISVLEGCLLGLFVLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEQPLPTLRSRTALLMPTYNEDPRRLLAG LQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYNALCDRVGGHGRIFYRRRADNAARKAGNVADWVRRFGGSYPQ MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVAWWHGAESNYWGHNAII RTQAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGWAMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVV GAKGLHWISRMHMLIGIGHYFTAPMWGLLMLIGIGIPLAGGDIDLAGDLPFSPARYWHGSSQGNAIWIFVCTMFVLLAPK LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGWDAQVRDDGKLSWPALLRSYG GLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVALTSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAAL EPSLI
Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
COG id: COG2943
COG function: function code M; Membrane glycosyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. OpgH subfamily
Homologues:
Organism=Escherichia coli, GI1787287, Length=616, Percent_Identity=37.987012987013, Blast_Score=387, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): OPGH_XANAC (Q8PPR7)
Other databases:
- EMBL: AE008923 - RefSeq: NP_640971.2 - ProteinModelPortal: Q8PPR7 - GeneID: 1154689 - GenomeReviews: AE008923_GR - KEGG: xac:XAC0618 - NMPDR: fig|190486.1.peg.615 - HOGENOM: HBG668600 - OMA: MSGECLT - ProtClustDB: PRK05454 - BioCyc: XAXO190486:XAC0618-MONOMER - HAMAP: MF_01072 - InterPro: IPR001173
Pfam domain/function: PF00535 Glycos_transf_2
EC number: 2.4.1.- [C]
Molecular weight: Translated: 70049; Mature: 70049
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xce1cdb0)-; HASH(0xd5139d0)-; HASH(0xcfe3168)-; HASH(0xc969a90)-; HASH(0xd4214d4)-; HASH(0xcb760fc)-;
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGTVTPSPITTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVR CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCE RFYLIGGTFATTAIAVWVMLSVLWPDGISVLEGCLLGLFVLLFAWIAMSFASAVAGFVTV EEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VARAGRKLGIDPEQPLPTLRSRTALLMPTYNEDPRRLLAGLQAIYESVAETGQLEHFDFF HHHCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE VLSDTTREHIGRAEELVYNALCDRVGGHGRIFYRRRADNAARKAGNVADWVRRFGGSYPQ EECCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCCE MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIA EEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH FGVAWWHGAESNYWGHNAIIRTQAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGW HHHHHHCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC AMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVVGAKGLHWISRMHMLIGIGHY CEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH FTAPMWGLLMLIGIGIPLAGGDIDLAGDLPFSPARYWHGSSQGNAIWIFVCTMFVLLAPK HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHH LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC DAQVRDDGKLSWPALLRSYGGLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVAL CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAALEPSLI HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCH >Mature Secondary Structure MDGTVTPSPITTAMPPVSALDAGTPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGVR CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCE RFYLIGGTFATTAIAVWVMLSVLWPDGISVLEGCLLGLFVLLFAWIAMSFASAVAGFVTV EEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VARAGRKLGIDPEQPLPTLRSRTALLMPTYNEDPRRLLAGLQAIYESVAETGQLEHFDFF HHHCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE VLSDTTREHIGRAEELVYNALCDRVGGHGRIFYRRRADNAARKAGNVADWVRRFGGSYPQ EECCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCCE MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIA EEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH FGVAWWHGAESNYWGHNAIIRTQAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGW HHHHHHCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC AMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVVGAKGLHWISRMHMLIGIGHY CEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH FTAPMWGLLMLIGIGIPLAGGDIDLAGDLPFSPARYWHGSSQGNAIWIFVCTMFVLLAPK HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHH LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC DAQVRDDGKLSWPALLRSYGGLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVAL CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAALEPSLI HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217