| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 77747647
Identifier: 77747647
GI number: 77747647
Start: 653702
End: 654502
Strand: Reverse
Name: 77747647
Synonym: PD0533
Alternate gene names: NA
Gene position: 654502-653702 (Counterclockwise)
Preceding gene: 28198446
Following gene: 28198442
Centisome position: 25.97
GC content: 54.68
Gene sequence:
>801_bases GTGAGTATTTTGAAAATTCATTTTTCTCAGCAGCAACAACCTGATCATACGCTCTCTCCGGGGGTGCATCGCATCGTCAG GCATGCGTCCGGAGTCGTTGCCTTTGCCGATGAGGTTCAGGGGCGTGGCGTCGTGTTGGCGCAATTCTCCTTGGATAACC GCGGTCTTTGGTTACAGGTGGCTAAAGGTATTCGTGGTATCCATGTTAATGGCCGCCCGGTGCGGCGTATGGCATGGTTG CGTGTCGGCGATGCTGTGTATGCCGATGGTGTGGAAATGCTTGTGATAGGTATTCAAGCTGAGCCACCCGATGATGCAAC CGCTACGCTTGATCGGAATTGCTTGGTGTTGCGTGGTGTTGGTGGACGTCACTATGGGCGTAGCTTCACTCTGGAAACAC CGCGTATCGTCGGGCAAGAGGCGGGGGTTGATATTTGGATTGATGATCCGGTTTTCGCGGCCCGTCATGCGGTGTTTGAG CGGCATGGTGATCGGGTGTTATTGCGCGATCTTGGTTCAGAGGAGGGGAGCGTGGTTAATGGTTGCAAGGTCCGCGATGC TTGGTTGCAGGCGGGTGATCAGATTGTGCTTGATGGTCAGCACCGTTTTGTACTGGAGAGTCCGCTTTTTTTATTGTTGC CACTGTCATGTTCGATGTCGGAGGACGTCGCTGCCCCGATACCACCGGCTGCTGTGTCTGTTAGAACGCCGCGTCGTACT GCACGTTGGCCGTGGTTGTTGTTGAGTGCGTTACTTCTGGCGACAGCGCTTGGCGCGTTGTTATGGTTCGATGTGCGCTG A
Upstream 100 bases:
>100_bases AACGTATCGTGTTTGGCCAGTCGTCTTGATGCCGCCAGTGCCATGTACTTTAAGAGGCTTGTGCTTCAGCAAGTGGGGCC AAATTGCTAGGCTCCCCGTG
Downstream 100 bases:
>100_bases CCATCCAGAATCATCGTAAAGATTCGGAGTGCATGGGGTTTAAGACATTGGGTGGCTTCAATATTGCTTATCACTTACGC TGAGTGTGAGCTAGGTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSILKIHFSQQQQPDHTLSPGVHRIVRHASGVVAFADEVQGRGVVLAQFSLDNRGLWLQVAKGIRGIHVNGRPVRRMAWL RVGDAVYADGVEMLVIGIQAEPPDDATATLDRNCLVLRGVGGRHYGRSFTLETPRIVGQEAGVDIWIDDPVFAARHAVFE RHGDRVLLRDLGSEEGSVVNGCKVRDAWLQAGDQIVLDGQHRFVLESPLFLLLPLSCSMSEDVAAPIPPAAVSVRTPRRT ARWPWLLLSALLLATALGALLWFDVR
Sequences:
>Translated_266_residues MSILKIHFSQQQQPDHTLSPGVHRIVRHASGVVAFADEVQGRGVVLAQFSLDNRGLWLQVAKGIRGIHVNGRPVRRMAWL RVGDAVYADGVEMLVIGIQAEPPDDATATLDRNCLVLRGVGGRHYGRSFTLETPRIVGQEAGVDIWIDDPVFAARHAVFE RHGDRVLLRDLGSEEGSVVNGCKVRDAWLQAGDQIVLDGQHRFVLESPLFLLLPLSCSMSEDVAAPIPPAAVSVRTPRRT ARWPWLLLSALLLATALGALLWFDVR >Mature_265_residues SILKIHFSQQQQPDHTLSPGVHRIVRHASGVVAFADEVQGRGVVLAQFSLDNRGLWLQVAKGIRGIHVNGRPVRRMAWLR VGDAVYADGVEMLVIGIQAEPPDDATATLDRNCLVLRGVGGRHYGRSFTLETPRIVGQEAGVDIWIDDPVFAARHAVFER HGDRVLLRDLGSEEGSVVNGCKVRDAWLQAGDQIVLDGQHRFVLESPLFLLLPLSCSMSEDVAAPIPPAAVSVRTPRRTA RWPWLLLSALLLATALGALLWFDVR
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29245; Mature: 29114
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILKIHFSQQQQPDHTLSPGVHRIVRHASGVVAFADEVQGRGVVLAQFSLDNRGLWLQV CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCCCEEEEE AKGIRGIHVNGRPVRRMAWLRVGDAVYADGVEMLVIGIQAEPPDDATATLDRNCLVLRGV ECCCCEEEECCCCHHHEEEEEECCHHHHCCEEEEEEEEECCCCCCCCEEECCCEEEEECC GGRHYGRSFTLETPRIVGQEAGVDIWIDDPVFAARHAVFERHGDRVLLRDLGSEEGSVVN CCCCCCCEEEECCCHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEC GCKVRDAWLQAGDQIVLDGQHRFVLESPLFLLLPLSCSMSEDVAAPIPPAAVSVRTPRRT CCEEEHHHHHCCCEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCC ARWPWLLLSALLLATALGALLWFDVR CCCHHHHHHHHHHHHHHHHHHEEECC >Mature Secondary Structure SILKIHFSQQQQPDHTLSPGVHRIVRHASGVVAFADEVQGRGVVLAQFSLDNRGLWLQV CEEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCCCEEEEE AKGIRGIHVNGRPVRRMAWLRVGDAVYADGVEMLVIGIQAEPPDDATATLDRNCLVLRGV ECCCCEEEECCCCHHHEEEEEECCHHHHCCEEEEEEEEECCCCCCCCEEECCCEEEEECC GGRHYGRSFTLETPRIVGQEAGVDIWIDDPVFAARHAVFERHGDRVLLRDLGSEEGSVVN CCCCCCCEEEECCCHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEC GCKVRDAWLQAGDQIVLDGQHRFVLESPLFLLLPLSCSMSEDVAAPIPPAAVSVRTPRRT CCEEEHHHHHCCCEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCC ARWPWLLLSALLLATALGALLWFDVR CCCHHHHHHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA