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The map label for this gene is yphD [H]

Identifier: 77465697

GI number: 77465697

Start: 810357

End: 811361

Strand: Direct

Name: yphD [H]

Synonym: RSP_3689

Alternate gene names: 77465697

Gene position: 810357-811361 (Clockwise)

Preceding gene: 77465696

Following gene: 77465698

Centisome position: 85.93

GC content: 67.96

Gene sequence:

>1005_bases
ATGGCGACCTACACCGAGCGCCAGGCCGGCTCGCGGCTGGCCGACTTCATCGGGGACCATGCGCAGGTCCTGTCGATCGC
GCTGTTCTTCGCGCTCTGTCTGCTGTTCTTCGGCGCCATGACCACCACCTTCCTCACCTCGGGCAACCTGCTCAACGTGG
TGCGACAGGCGGCGCCCATCCTGATCGTGGCCGTGGCCATGACCCTCGTCATCACGACCGCCGGGATCGACCTGTCGGTG
GGCTCGATGGTGGCGCTCATCAACGCGCTCGCGGCCATCGTCATGGCAAGCGGGCTCGACTGGACCCTGACCCTGCCGCT
GATGCTGGTCGCCGGCGCGCTGATCGGCGGGATCCAGGGCTGGTTCATCGCCTATCAGGGCATTCCGGCCTTCATCGTGA
CGCTCGCAGGCCTCTCGATCCTGCGCGGCTTCGCGCTCTACCTGACCGAGGGCTATTCGATCCCGATCCGCGACGCGGCG
GGCTTCTTCTGGCTCGGCCGCGGCGAGGTGCTGGGCTTCCCCGTGCCCGCCCTGATCGCGATCCTGATCGCCGTGCTGGG
CTTCGTCGTCATGCTGCGCACCCAGTATGGCCGGCAGGTGATCGCCGTCGGCTCGAACATGGAGGCCGCGCGCCGGGTGG
GGATGCCCGCCAAGCGCGTGCTGGCCTCGGTCTATGTCGTCTCGGGCGTGGCGAGCGCGGTGGCGGGCATGCTGATCGCC
GCCCGCCTCGGCTCGGGCTCGTCCAACGCGGCACAGGGCTTCGAGCTGCAGGTGATCGCGGCCGTCGTGCTGGGGGGCAC
CTCGCTCATGGGCGGCAAGGCCTCGATGCTGGGCACCGTCCTCGGCACCATGACCATCGCCGTCATCGGCAACGGGCTGA
TCCTCATGCATATCTCGCCCTTCTTCACCCAGATCGTCACAGGCACCATCATCCTCGTCGCCATCTGGATGAACACGCGG
CTCTTCGATCGCCCCTGGCGCTTCGGACGGAGGAAACCGGCATGA

Upstream 100 bases:

>100_bases
TGGCGGTCATGTACGAGGGCACCAAGGTGGCCGAGCGCGCCATCGCCGACACCAACCTGCAGGAACTCGTCGATCTCATC
GTCGGCAAGGGAGGCCACTG

Downstream 100 bases:

>100_bases
GCGAGCTTTCTCCCTGCCACGTCCGCTCGGGCCGGATCATGACGGTGGACGGGCCGATCCCGTCCTCCGCCCTCGGCCAC
ACGCTGATGCACGAGCATCT

Product: ABC sugar transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MATYTERQAGSRLADFIGDHAQVLSIALFFALCLLFFGAMTTTFLTSGNLLNVVRQAAPILIVAVAMTLVITTAGIDLSV
GSMVALINALAAIVMASGLDWTLTLPLMLVAGALIGGIQGWFIAYQGIPAFIVTLAGLSILRGFALYLTEGYSIPIRDAA
GFFWLGRGEVLGFPVPALIAILIAVLGFVVMLRTQYGRQVIAVGSNMEAARRVGMPAKRVLASVYVVSGVASAVAGMLIA
ARLGSGSSNAAQGFELQVIAAVVLGGTSLMGGKASMLGTVLGTMTIAVIGNGLILMHISPFFTQIVTGTIILVAIWMNTR
LFDRPWRFGRRKPA

Sequences:

>Translated_334_residues
MATYTERQAGSRLADFIGDHAQVLSIALFFALCLLFFGAMTTTFLTSGNLLNVVRQAAPILIVAVAMTLVITTAGIDLSV
GSMVALINALAAIVMASGLDWTLTLPLMLVAGALIGGIQGWFIAYQGIPAFIVTLAGLSILRGFALYLTEGYSIPIRDAA
GFFWLGRGEVLGFPVPALIAILIAVLGFVVMLRTQYGRQVIAVGSNMEAARRVGMPAKRVLASVYVVSGVASAVAGMLIA
ARLGSGSSNAAQGFELQVIAAVVLGGTSLMGGKASMLGTVLGTMTIAVIGNGLILMHISPFFTQIVTGTIILVAIWMNTR
LFDRPWRFGRRKPA
>Mature_333_residues
ATYTERQAGSRLADFIGDHAQVLSIALFFALCLLFFGAMTTTFLTSGNLLNVVRQAAPILIVAVAMTLVITTAGIDLSVG
SMVALINALAAIVMASGLDWTLTLPLMLVAGALIGGIQGWFIAYQGIPAFIVTLAGLSILRGFALYLTEGYSIPIRDAAG
FFWLGRGEVLGFPVPALIAILIAVLGFVVMLRTQYGRQVIAVGSNMEAARRVGMPAKRVLASVYVVSGVASAVAGMLIAA
RLGSGSSNAAQGFELQVIAAVVLGGTSLMGGKASMLGTVLGTMTIAVIGNGLILMHISPFFTQIVTGTIILVAIWMNTRL
FDRPWRFGRRKPA

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=40.8805031446541, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=33.5180055401662, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790191, Length=284, Percent_Identity=36.6197183098592, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI145693152, Length=270, Percent_Identity=34.4444444444444, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=31.1258278145695, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87082395, Length=306, Percent_Identity=33.6601307189542, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=34.8837209302326, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787794, Length=304, Percent_Identity=30.9210526315789, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788471, Length=298, Percent_Identity=32.5503355704698, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787793, Length=293, Percent_Identity=30.7167235494881, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35012; Mature: 34881

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATYTERQAGSRLADFIGDHAQVLSIALFFALCLLFFGAMTTTFLTSGNLLNVVRQAAPI
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LIVAVAMTLVITTAGIDLSVGSMVALINALAAIVMASGLDWTLTLPLMLVAGALIGGIQG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
WFIAYQGIPAFIVTLAGLSILRGFALYLTEGYSIPIRDAAGFFWLGRGEVLGFPVPALIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH
ILIAVLGFVVMLRTQYGRQVIAVGSNMEAARRVGMPAKRVLASVYVVSGVASAVAGMLIA
HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARLGSGSSNAAQGFELQVIAAVVLGGTSLMGGKASMLGTVLGTMTIAVIGNGLILMHISP
HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
FFTQIVTGTIILVAIWMNTRLFDRPWRFGRRKPA
HHHHHHHHHHHHHHHHHCCHHCCCCHHCCCCCCC
>Mature Secondary Structure 
ATYTERQAGSRLADFIGDHAQVLSIALFFALCLLFFGAMTTTFLTSGNLLNVVRQAAPI
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LIVAVAMTLVITTAGIDLSVGSMVALINALAAIVMASGLDWTLTLPLMLVAGALIGGIQG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
WFIAYQGIPAFIVTLAGLSILRGFALYLTEGYSIPIRDAAGFFWLGRGEVLGFPVPALIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH
ILIAVLGFVVMLRTQYGRQVIAVGSNMEAARRVGMPAKRVLASVYVVSGVASAVAGMLIA
HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARLGSGSSNAAQGFELQVIAAVVLGGTSLMGGKASMLGTVLGTMTIAVIGNGLILMHISP
HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
FFTQIVTGTIILVAIWMNTRLFDRPWRFGRRKPA
HHHHHHHHHHHHHHHHHCCHHCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]