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The map label for this gene is ydfH [H]

Identifier: 77465683

GI number: 77465683

Start: 795171

End: 795896

Strand: Reverse

Name: ydfH [H]

Synonym: RSP_3676

Alternate gene names: 77465683

Gene position: 795896-795171 (Counterclockwise)

Preceding gene: 77465686

Following gene: 77465682

Centisome position: 84.4

GC content: 68.87

Gene sequence:

>726_bases
ATGGGTGTGGGCGAGGCCTTCGGAGCGGGACCGCAGCGCAGCCGCAGCGCGCAGGTGGAGCATGCGCTCCGCCGCGAGAT
CGTGCTGGGGACGCTTCCGCCCGGCGGCGTGCTGCGCGAACTGGATCTGGCGCAGCGGTTCGCGGTGGCGCAGGGCACCA
TCCGCGAAGCGCTGATGCGGCTGTCGGAAGAAGGGCTGGTCCAGCGCCGCGCCCGCCGCGACACCCATGTGACGGAGGCC
CATTCCGACGATGTGGTGGAGCTTCTGCGCATCCGCCACGACATCGAATGCCGCGCTGCGATCCGGGTGATCGAGGCGAA
CGACCCTCGCCTGCGCAGGGATCTCGACATGCTGCTGCAGGCCATGCGGCTGGCCGCGCTGCAGGAAGACGAATATGCGC
TGCTGGAGCAAGACTGCCGCTTTCACCTGCGTCTGTTCGAGGCCGCCGCCATGCCGGTGGTGGAGCCGGTGCTGATGCGC
TGCCTTCTTCATACGCAGCGGTTCAAGATCCTGAACAGTGCGGCGAACAGCCGGGAGCTGCTCGCGACCGCCGACCGGCA
TGTCTCGATCCTCGAGGCGCTAGAGACGCGCAGCGCCGAGGCGCTGATGCGCGCGCTCTCGCATCACATCGCGACCATCG
TCGATTTCGGCCCCGAGGTCATGCCGACGCTCGCGCCCGAGGCAGGGCAGGGCATGGCGACCCCCGCCCTGAAGGTGCAT
CCATGA

Upstream 100 bases:

>100_bases
CTTCTCGCGCCGAAGCCCGTCGGACCCACATTATCAATATCGTTGACATTATCAATAATCATGTGATTATCAATACAACA
TCAGGGAGGATGCAGGGGTC

Downstream 100 bases:

>100_bases
GCCTGACCCTTGCTCCCGAAATGCGCGCCGTGCTCGACCGGCTCTTGGCCGAGGACGGGGTGCAGCCCGATCCGACGCTC
CTGCCGCCGGCCGAGGGCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MGVGEAFGAGPQRSRSAQVEHALRREIVLGTLPPGGVLRELDLAQRFAVAQGTIREALMRLSEEGLVQRRARRDTHVTEA
HSDDVVELLRIRHDIECRAAIRVIEANDPRLRRDLDMLLQAMRLAALQEDEYALLEQDCRFHLRLFEAAAMPVVEPVLMR
CLLHTQRFKILNSAANSRELLATADRHVSILEALETRSAEALMRALSHHIATIVDFGPEVMPTLAPEAGQGMATPALKVH
P

Sequences:

>Translated_241_residues
MGVGEAFGAGPQRSRSAQVEHALRREIVLGTLPPGGVLRELDLAQRFAVAQGTIREALMRLSEEGLVQRRARRDTHVTEA
HSDDVVELLRIRHDIECRAAIRVIEANDPRLRRDLDMLLQAMRLAALQEDEYALLEQDCRFHLRLFEAAAMPVVEPVLMR
CLLHTQRFKILNSAANSRELLATADRHVSILEALETRSAEALMRALSHHIATIVDFGPEVMPTLAPEAGQGMATPALKVH
P
>Mature_240_residues
GVGEAFGAGPQRSRSAQVEHALRREIVLGTLPPGGVLRELDLAQRFAVAQGTIREALMRLSEEGLVQRRARRDTHVTEAH
SDDVVELLRIRHDIECRAAIRVIEANDPRLRRDLDMLLQAMRLAALQEDEYALLEQDCRFHLRLFEAAAMPVVEPVLMRC
LLHTQRFKILNSAANSRELLATADRHVSILEALETRSAEALMRALSHHIATIVDFGPEVMPTLAPEAGQGMATPALKVHP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26845; Mature: 26714

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVGEAFGAGPQRSRSAQVEHALRREIVLGTLPPGGVLRELDLAQRFAVAQGTIREALMR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LSEEGLVQRRARRDTHVTEAHSDDVVELLRIRHDIECRAAIRVIEANDPRLRRDLDMLLQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHHHHHHH
AMRLAALQEDEYALLEQDCRFHLRLFEAAAMPVVEPVLMRCLLHTQRFKILNSAANSREL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LATADRHVSILEALETRSAEALMRALSHHIATIVDFGPEVMPTLAPEAGQGMATPALKVH
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEC
P
C
>Mature Secondary Structure 
GVGEAFGAGPQRSRSAQVEHALRREIVLGTLPPGGVLRELDLAQRFAVAQGTIREALMR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LSEEGLVQRRARRDTHVTEAHSDDVVELLRIRHDIECRAAIRVIEANDPRLRRDLDMLLQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHHHHHHH
AMRLAALQEDEYALLEQDCRFHLRLFEAAAMPVVEPVLMRCLLHTQRFKILNSAANSREL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LATADRHVSILEALETRSAEALMRALSHHIATIVDFGPEVMPTLAPEAGQGMATPALKVH
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]