Click here to switch to the map view.

The map label for this gene is yiaM [C]

Identifier: 77465670

GI number: 77465670

Start: 771039

End: 771593

Strand: Reverse

Name: yiaM [C]

Synonym: RSP_3663

Alternate gene names: 77465670

Gene position: 771593-771039 (Counterclockwise)

Preceding gene: 77465671

Following gene: 77465669

Centisome position: 81.82

GC content: 65.23

Gene sequence:

>555_bases
ATGTCTTACCTAAGGGAAGTCTACCTGCGCAGTCTGCGCGGGGCAGTGGTCCTGTGCCTCGGCGGCATCCTGGCCATGGT
CTTTCTCAATGTCGTGCTGCGCTACCTCTTCAACAGCGGCATCTTCCTGACCGAGGGCCTGTCCGGCCTGCTCTTCGTCT
GGATGACCTTCGCGGGCGCGCTGCTCGTGCTCTACGACGGCGGTCACATCGGGGTCGATGCGCTGGTGCGGCGCGTGCCG
GTCGCGGCGCAGCGGGGGCTGTTCCTTCTGGCGCATGCGGTGATGCTCTATGTCAGCTGGCAGATGCTGCTCGGCAGCTG
GCAGCAGATGGTGATCAATCTCAAGGTGATCGCGCCGGGGACCCGACTGCCGGTGGCCCTGCTCTATGCGGCCGGGGTCT
TCTTCGCGGCGATGAGCGGCCTTTTCCTTTTGCATCAGATGTTTCTCCTTCTGACCGGGCGTCTGCCGCAGAGCGCGCTG
CGCCCCGGCACCTCCGAAGAGGAAAGCGATGTCGAGCGCCATGTGGGCGCGCTCGCGCCGGAGGGCCGCAAATGA

Upstream 100 bases:

>100_bases
GGGCTAGAGCACTGCCCGGGCGTCTTCCGGGCACCAGGCCTCTTTGCAACGAGAACGGTGGGCCGGGCACCGACCGCGGT
CACACTCAACAGGGGGCTTT

Downstream 100 bases:

>100_bases
CCATCGGCCTCTTTCTCGGAACCCTGATCGCGATGATCGGCATCGGCGCCCCCATCGCCTATGCGCTGATCGTGACCGGC
GCGGCGCTGATGTGGCAGAT

Product: TRAP-T family transporter small inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSYLREVYLRSLRGAVVLCLGGILAMVFLNVVLRYLFNSGIFLTEGLSGLLFVWMTFAGALLVLYDGGHIGVDALVRRVP
VAAQRGLFLLAHAVMLYVSWQMLLGSWQQMVINLKVIAPGTRLPVALLYAAGVFFAAMSGLFLLHQMFLLLTGRLPQSAL
RPGTSEEESDVERHVGALAPEGRK

Sequences:

>Translated_184_residues
MSYLREVYLRSLRGAVVLCLGGILAMVFLNVVLRYLFNSGIFLTEGLSGLLFVWMTFAGALLVLYDGGHIGVDALVRRVP
VAAQRGLFLLAHAVMLYVSWQMLLGSWQQMVINLKVIAPGTRLPVALLYAAGVFFAAMSGLFLLHQMFLLLTGRLPQSAL
RPGTSEEESDVERHVGALAPEGRK
>Mature_183_residues
SYLREVYLRSLRGAVVLCLGGILAMVFLNVVLRYLFNSGIFLTEGLSGLLFVWMTFAGALLVLYDGGHIGVDALVRRVPV
AAQRGLFLLAHAVMLYVSWQMLLGSWQQMVINLKVIAPGTRLPVALLYAAGVFFAAMSGLFLLHQMFLLLTGRLPQSALR
PGTSEEESDVERHVGALAPEGRK

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter small permease family [H]

Homologues:

Organism=Escherichia coli, GI1790002, Length=143, Percent_Identity=30.0699300699301, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007387 [H]

Pfam domain/function: PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 20164; Mature: 20033

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLREVYLRSLRGAVVLCLGGILAMVFLNVVLRYLFNSGIFLTEGLSGLLFVWMTFAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLVLYDGGHIGVDALVRRVPVAAQRGLFLLAHAVMLYVSWQMLLGSWQQMVINLKVIAPG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
TRLPVALLYAAGVFFAAMSGLFLLHQMFLLLTGRLPQSALRPGTSEEESDVERHVGALAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCC
EGRK
CCCC
>Mature Secondary Structure 
SYLREVYLRSLRGAVVLCLGGILAMVFLNVVLRYLFNSGIFLTEGLSGLLFVWMTFAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLVLYDGGHIGVDALVRRVPVAAQRGLFLLAHAVMLYVSWQMLLGSWQQMVINLKVIAPG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
TRLPVALLYAAGVFFAAMSGLFLLHQMFLLLTGRLPQSALRPGTSEEESDVERHVGALAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCC
EGRK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]