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The map label for this gene is ybeY [C]

Identifier: 77465599

GI number: 77465599

Start: 691298

End: 691801

Strand: Reverse

Name: ybeY [C]

Synonym: RSP_3598

Alternate gene names: 77465599

Gene position: 691801-691298 (Counterclockwise)

Preceding gene: 77465600

Following gene: 77465598

Centisome position: 73.36

GC content: 68.45

Gene sequence:

>504_bases
ATGGAGCCTCTGGTTGAGACAGTGATCGAAGACGGGCGCTGGGAGGAGCTTGACCTCCCCGCGCTCGCGACCCGTGCGGC
CGAGGCCACCCTCGCGGCGCTGGACATGCCGGCGGAGGGCTTCACCCTCGTCGTAATGGGCTGCGACGATGCGCGCATCG
CCGAGCTGAACGGCGCCTTCCGCCAGAAGGGCAAGCCCACGAACGTGCTCTCCTGGCCGTCGGAAGAGCGCGCCTCCGAA
GAGCCGGGCATGGCGCCCGAGCCGCCCGAACCCGGCGATCCCGAGGATCCCGAGCCGCTCGGCGACGTAGCCATCGCCTT
CGAGACCTGCCAGCGCGAGGCGGCCGAGCAGGGCAAGCCCGTGACGGATCATGTCACCCATCTTCTGGTGCATGGGGTGC
TGCATCTTCTCGGCTACGACCATGTCGAGGAGGCGGACGGCGACCTGATGGAGGCGACCGAGACAAGGATACTTGCGGGG
CTGGGGGTGCCCGACCCATATTGA

Upstream 100 bases:

>100_bases
CTGAAGTCGGTGCGCGGGGTCTCGTTCAACTACTTCACGGCCAAGGATGTGGTGCGCCACCCGCTTGTGGCCCGCATCAT
CGAGGCGTATGAGGCCGAAG

Downstream 100 bases:

>100_bases
TCCGGCGCCGGATCTGGCGCGGCCATTCGGAAAGGACAGATGGACAGTAGCAGCGACGGGTCTATGGCAGCGCAGAGCGC
GCCCGACCAGACGGAAGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MEPLVETVIEDGRWEELDLPALATRAAEATLAALDMPAEGFTLVVMGCDDARIAELNGAFRQKGKPTNVLSWPSEERASE
EPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAG
LGVPDPY

Sequences:

>Translated_167_residues
MEPLVETVIEDGRWEELDLPALATRAAEATLAALDMPAEGFTLVVMGCDDARIAELNGAFRQKGKPTNVLSWPSEERASE
EPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAG
LGVPDPY
>Mature_167_residues
MEPLVETVIEDGRWEELDLPALATRAAEATLAALDMPAEGFTLVVMGCDDARIAELNGAFRQKGKPTNVLSWPSEERASE
EPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAG
LGVPDPY

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=119, Percent_Identity=45.3781512605042, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_RHOS4 (Q3IW83)

Other databases:

- EMBL:   CP000144
- RefSeq:   YP_355102.1
- ProteinModelPortal:   Q3IW83
- SMR:   Q3IW83
- STRING:   Q3IW83
- GeneID:   3722115
- GenomeReviews:   CP000144_GR
- KEGG:   rsp:RSP_3598
- NMPDR:   fig|272943.3.peg.3396
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HGILHIT
- ProtClustDB:   CLSK935180
- BioCyc:   RSPH272943:RSP_3598-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17988; Mature: 17988

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPLVETVIEDGRWEELDLPALATRAAEATLAALDMPAEGFTLVVMGCDDARIAELNGAF
CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
RQKGKPTNVLSWPSEERASEEPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKP
HHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
VTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEPLVETVIEDGRWEELDLPALATRAAEATLAALDMPAEGFTLVVMGCDDARIAELNGAF
CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
RQKGKPTNVLSWPSEERASEEPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKP
HHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
VTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA