| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
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The map label for this gene is caiC [H]
Identifier: 77465531
GI number: 77465531
Start: 612257
End: 613921
Strand: Reverse
Name: caiC [H]
Synonym: RSP_3532
Alternate gene names: 77465531
Gene position: 613921-612257 (Counterclockwise)
Preceding gene: 77465532
Following gene: 77465530
Centisome position: 65.1
GC content: 69.55
Gene sequence:
>1665_bases ATGTGGAAGGATGAAGTCCTCGCCCAGGCCGTCGTCCCCTACGAGGACCGCCGCCGCCGGATCGAGGCCGAGCCGTTGCC GGAGAATATCGGGGCGCTGATCGACGCGGCCGCCGCGGAGGCCGGCGACCGGGTGGTGTGGAACTTCTTCGAGAGCGGCG AGACCCTTACCTACGGCGAGATGCGCCGCAAGGTGAACGGGCTGGCCGCGCGCCTCGTGGCCCTCGGGATCGGCAAGGGC ACCCATGTGGGCGTGATGCTGCCGAACGTCGAGGCTTTCCCGCTGACCTGGCTGGCGCTCGGCCGGATCGGGGCAGTGAT GCTGCCGATCAACCCCGGCTACACCCCGCGCGAGATCGCCCATGTGATGAAGGTCGCCGAGGCAGACTGGGTGGTGACCC ACGACAGCACGCGGGCCGTGCTCGACGAGGCCCATGCGGCGGGCCTGATCGCGCTGCCCGCCGAGCGGCTGATCGTGGTG GGCGGCGCCCTAGGCGGGGCGCATGACTGGGCCGAGCTTGCCTCGGAGCCGCAGGACCATTTCACCCCGCCCGAGCCGGT GGGGCACGACGATCTCCTGAACATCCAGTTCACATCCGGCACCTCGGGCTTTCCCAAGGGCTGCATGCTCGGCCAGCGCT ACTGGATCTCGGCGGGCAAGGTGAACGCCTTCCGCGACGGCCGGATCTACCGGCGCATCCTCGCCTCCACGCCCTTCTTC TACATGGATCCGCAATGGCTCCTGCTGATGACGCTCTACCAGCGCGGCACCCTGTTCGTGGCGGCCCGGCAATCGACGAG CCGCTTCTCGGGCTGGCTCGAAGAGCATGAGATCGACTTCTGTCTGCTGCCCTGGGTGCTGCACGGCATGGCGCCGCAGC AGCATGACGCGCAGAATCGGGTTGTGCGCGCCAATATCTACGGCTGCCCGCGCGACCTGCACCGCGGGCTCGAGGAGCGG TTCGACCTGAACGCCCGCGAGGCCTTCGGCATGACCGAGATCGGCCCGGCGATGTTCGCGCCCATCGAGCGCGCGGACAA GGTGGGCTCGGGCTCCTGCGGCGTGCCGTGCCCGTTCCGCGAGTGCCGCATCGTGGGCGAGGACGGCCAGCCCGTGGCGC GGGGCGAGATCGGCGAATTGCAGATCCGCGGACCGGGCATCATGCTCGGCTACTACAACAACCCCGAGGCTACGGCCGAG GTGTTGAAGGACGGCTGGTTCTCCTCGGGCGACCTCTTCCGTCAGGATGAGGACGGGTTCTTCTACATCGTGGGCCGCAA GAAGGACATGATCCGGCGTTCGGCCGAGAACATCGCCGCGCGCGAGGTCGAGACGGTGCTGGCCGCGGCGCCCGGCGTGG CCGAGGTGGCGGTGGTGGGCGTGCCCGACCCGCTGCGCGGCGAGGAGGTCAAGGCCTGCATCCGCCTGAAGGAGGGCGTG GTCGCCGATGCCGCGATCCTCGAGGGCATCGTGGCCACCGCGCAGGCCGGGCTCGCGCCCTTCAAGGTGCCGCGCTTCTA CGCCTTCGTCGAGGATTTCCCGCGCACCGCCTCGCTGAAGATCGCCAAGCCCCGGATCACCGAAGGCGTGGCCGACCTGC GCGCGGGCAGCTTTGACCGCACCAGCGGGGAATGGATCCCCGCGACCGAGGGAGCCTCCGCATGA
Upstream 100 bases:
>100_bases CACCGACCTGAAGGCCGTCTGGTTCGCCCACTGACCTCAGCGCCCGCCCATCGGGCGGGCACTTCTTCCTGTTGCCCACG CCACTCACTGGAGCCCGCCG
Downstream 100 bases:
>100_bases GCCCGCAGTATGATGCCATCATCGTGGGCGGCGGCCACAACGGGCTGACCTGCGGCGCCTACCTCGCCCGCGCCGGCGTG AAGGTGCTGGTGGTGGAGCG
Product: AMP-binding enzyme
Products: D-carnitinyl-CoA; crotonobetainyl-CoA; L-carnitinyl-CoA [C]
Alternate protein names: NA
Number of amino acids: Translated: 554; Mature: 554
Protein sequence:
>554_residues MWKDEVLAQAVVPYEDRRRRIEAEPLPENIGALIDAAAAEAGDRVVWNFFESGETLTYGEMRRKVNGLAARLVALGIGKG THVGVMLPNVEAFPLTWLALGRIGAVMLPINPGYTPREIAHVMKVAEADWVVTHDSTRAVLDEAHAAGLIALPAERLIVV GGALGGAHDWAELASEPQDHFTPPEPVGHDDLLNIQFTSGTSGFPKGCMLGQRYWISAGKVNAFRDGRIYRRILASTPFF YMDPQWLLLMTLYQRGTLFVAARQSTSRFSGWLEEHEIDFCLLPWVLHGMAPQQHDAQNRVVRANIYGCPRDLHRGLEER FDLNAREAFGMTEIGPAMFAPIERADKVGSGSCGVPCPFRECRIVGEDGQPVARGEIGELQIRGPGIMLGYYNNPEATAE VLKDGWFSSGDLFRQDEDGFFYIVGRKKDMIRRSAENIAAREVETVLAAAPGVAEVAVVGVPDPLRGEEVKACIRLKEGV VADAAILEGIVATAQAGLAPFKVPRFYAFVEDFPRTASLKIAKPRITEGVADLRAGSFDRTSGEWIPATEGASA
Sequences:
>Translated_554_residues MWKDEVLAQAVVPYEDRRRRIEAEPLPENIGALIDAAAAEAGDRVVWNFFESGETLTYGEMRRKVNGLAARLVALGIGKG THVGVMLPNVEAFPLTWLALGRIGAVMLPINPGYTPREIAHVMKVAEADWVVTHDSTRAVLDEAHAAGLIALPAERLIVV GGALGGAHDWAELASEPQDHFTPPEPVGHDDLLNIQFTSGTSGFPKGCMLGQRYWISAGKVNAFRDGRIYRRILASTPFF YMDPQWLLLMTLYQRGTLFVAARQSTSRFSGWLEEHEIDFCLLPWVLHGMAPQQHDAQNRVVRANIYGCPRDLHRGLEER FDLNAREAFGMTEIGPAMFAPIERADKVGSGSCGVPCPFRECRIVGEDGQPVARGEIGELQIRGPGIMLGYYNNPEATAE VLKDGWFSSGDLFRQDEDGFFYIVGRKKDMIRRSAENIAAREVETVLAAAPGVAEVAVVGVPDPLRGEEVKACIRLKEGV VADAAILEGIVATAQAGLAPFKVPRFYAFVEDFPRTASLKIAKPRITEGVADLRAGSFDRTSGEWIPATEGASA >Mature_554_residues MWKDEVLAQAVVPYEDRRRRIEAEPLPENIGALIDAAAAEAGDRVVWNFFESGETLTYGEMRRKVNGLAARLVALGIGKG THVGVMLPNVEAFPLTWLALGRIGAVMLPINPGYTPREIAHVMKVAEADWVVTHDSTRAVLDEAHAAGLIALPAERLIVV GGALGGAHDWAELASEPQDHFTPPEPVGHDDLLNIQFTSGTSGFPKGCMLGQRYWISAGKVNAFRDGRIYRRILASTPFF YMDPQWLLLMTLYQRGTLFVAARQSTSRFSGWLEEHEIDFCLLPWVLHGMAPQQHDAQNRVVRANIYGCPRDLHRGLEER FDLNAREAFGMTEIGPAMFAPIERADKVGSGSCGVPCPFRECRIVGEDGQPVARGEIGELQIRGPGIMLGYYNNPEATAE VLKDGWFSSGDLFRQDEDGFFYIVGRKKDMIRRSAENIAAREVETVLAAAPGVAEVAVVGVPDPLRGEEVKACIRLKEGV VADAAILEGIVATAQAGLAPFKVPRFYAFVEDFPRTASLKIAKPRITEGVADLRAGSFDRTSGEWIPATEGASA
Specific function: Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=552, Percent_Identity=28.6231884057971, Blast_Score=179, Evalue=4e-45, Organism=Homo sapiens, GI42544132, Length=506, Percent_Identity=26.4822134387352, Blast_Score=145, Evalue=1e-34, Organism=Homo sapiens, GI38505220, Length=513, Percent_Identity=27.0955165692008, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI157311624, Length=510, Percent_Identity=26.2745098039216, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI157311622, Length=510, Percent_Identity=26.2745098039216, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI58082049, Length=514, Percent_Identity=25.6809338521401, Blast_Score=129, Evalue=8e-30, Organism=Homo sapiens, GI115511026, Length=507, Percent_Identity=26.232741617357, Blast_Score=125, Evalue=7e-29, Organism=Homo sapiens, GI122937307, Length=506, Percent_Identity=25.8893280632411, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI187761345, Length=221, Percent_Identity=36.1990950226244, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI187761343, Length=221, Percent_Identity=36.1990950226244, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI8923896, Length=211, Percent_Identity=29.3838862559242, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI253970489, Length=211, Percent_Identity=29.3838862559242, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI13325057, Length=557, Percent_Identity=23.6983842010772, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI13375727, Length=184, Percent_Identity=26.6304347826087, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI13236579, Length=406, Percent_Identity=24.8768472906404, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI221142682, Length=485, Percent_Identity=30.1030927835052, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1788107, Length=527, Percent_Identity=28.6527514231499, Blast_Score=186, Evalue=5e-48, Organism=Escherichia coli, GI145693145, Length=507, Percent_Identity=27.6134122287968, Blast_Score=144, Evalue=1e-35, Organism=Escherichia coli, GI1786810, Length=491, Percent_Identity=26.0692464358452, Blast_Score=123, Evalue=3e-29, Organism=Escherichia coli, GI1790505, Length=221, Percent_Identity=27.6018099547511, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788595, Length=482, Percent_Identity=23.0290456431535, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994703, Length=552, Percent_Identity=26.9927536231884, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI71994690, Length=552, Percent_Identity=26.9927536231884, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI71994694, Length=552, Percent_Identity=26.9927536231884, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI32563687, Length=501, Percent_Identity=26.1477045908184, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17560308, Length=561, Percent_Identity=28.8770053475936, Blast_Score=143, Evalue=3e-34, Organism=Caenorhabditis elegans, GI71996755, Length=493, Percent_Identity=26.9776876267748, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI17559526, Length=540, Percent_Identity=26.8518518518519, Blast_Score=142, Evalue=6e-34, Organism=Caenorhabditis elegans, GI17558820, Length=493, Percent_Identity=26.5720081135903, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17557194, Length=561, Percent_Identity=25.8467023172906, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17531443, Length=368, Percent_Identity=25.5434782608696, Blast_Score=108, Evalue=5e-24, Organism=Caenorhabditis elegans, GI115534440, Length=535, Percent_Identity=22.803738317757, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71985884, Length=358, Percent_Identity=27.9329608938547, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538037, Length=207, Percent_Identity=30.4347826086957, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560140, Length=446, Percent_Identity=22.8699551569507, Blast_Score=88, Evalue=9e-18, Organism=Saccharomyces cerevisiae, GI6319699, Length=457, Percent_Identity=25.382932166302, Blast_Score=117, Evalue=3e-27, Organism=Saccharomyces cerevisiae, GI6319264, Length=528, Percent_Identity=23.6742424242424, Blast_Score=103, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6323182, Length=574, Percent_Identity=24.390243902439, Blast_Score=101, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6320852, Length=163, Percent_Identity=33.7423312883436, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI24581924, Length=553, Percent_Identity=28.3905967450271, Blast_Score=173, Evalue=3e-43, Organism=Drosophila melanogaster, GI18859661, Length=511, Percent_Identity=28.3757338551859, Blast_Score=152, Evalue=8e-37, Organism=Drosophila melanogaster, GI21355181, Length=465, Percent_Identity=24.5161290322581, Blast_Score=116, Evalue=5e-26, Organism=Drosophila melanogaster, GI24656500, Length=512, Percent_Identity=23.6328125, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI20130357, Length=381, Percent_Identity=27.5590551181102, Blast_Score=109, Evalue=6e-24, Organism=Drosophila melanogaster, GI24667955, Length=542, Percent_Identity=24.5387453874539, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI62472339, Length=542, Percent_Identity=24.3542435424354, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI24648253, Length=443, Percent_Identity=24.6049661399549, Blast_Score=106, Evalue=5e-23, Organism=Drosophila melanogaster, GI19922652, Length=537, Percent_Identity=24.0223463687151, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI24648255, Length=443, Percent_Identity=24.8306997742664, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI21356441, Length=468, Percent_Identity=23.9316239316239, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24653035, Length=313, Percent_Identity=26.8370607028754, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI21358303, Length=336, Percent_Identity=25.5952380952381, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24667959, Length=511, Percent_Identity=23.8747553816047, Blast_Score=92, Evalue=9e-19, Organism=Drosophila melanogaster, GI21356947, Length=428, Percent_Identity=22.4299065420561, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI281365686, Length=327, Percent_Identity=24.1590214067278, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI161076582, Length=328, Percent_Identity=25.609756097561, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI24648257, Length=434, Percent_Identity=25.8064516129032, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24648260, Length=551, Percent_Identity=21.4156079854809, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI21355225, Length=252, Percent_Identity=24.2063492063492, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 60576; Mature: 60576
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKDEVLAQAVVPYEDRRRRIEAEPLPENIGALIDAAAAEAGDRVVWNFFESGETLTYGE CCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHCCCEEEHHH MRRKVNGLAARLVALGIGKGTHVGVMLPNVEAFPLTWLALGRIGAVMLPINPGYTPREIA HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHH HVMKVAEADWVVTHDSTRAVLDEAHAAGLIALPAERLIVVGGALGGAHDWAELASEPQDH HHHHHHCCCEEEECCCHHHHHHHHHCCCEEEECCCEEEEEECCCCCCHHHHHHHCCCHHC FTPPEPVGHDDLLNIQFTSGTSGFPKGCMLGQRYWISAGKVNAFRDGRIYRRILASTPFF CCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCEE YMDPQWLLLMTLYQRGTLFVAARQSTSRFSGWLEEHEIDFCLLPWVLHGMAPQQHDAQNR EECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCEEEHHHHHCCCCCCCCCCCCC VVRANIYGCPRDLHRGLEERFDLNAREAFGMTEIGPAMFAPIERADKVGSGSCGVPCPFR EEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCHHHHHCCCCCCCCCCCCHH ECRIVGEDGQPVARGEIGELQIRGPGIMLGYYNNPEATAEVLKDGWFSSGDLFRQDEDGF HCEEECCCCCCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCCCEECCCCE FYIVGRKKDMIRRSAENIAAREVETVLAAAPGVAEVAVVGVPDPLRGEEVKACIRLKEGV EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCC VADAAILEGIVATAQAGLAPFKVPRFYAFVEDFPRTASLKIAKPRITEGVADLRAGSFDR HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCC TSGEWIPATEGASA CCCCEECCCCCCCC >Mature Secondary Structure MWKDEVLAQAVVPYEDRRRRIEAEPLPENIGALIDAAAAEAGDRVVWNFFESGETLTYGE CCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHCCCEEEHHH MRRKVNGLAARLVALGIGKGTHVGVMLPNVEAFPLTWLALGRIGAVMLPINPGYTPREIA HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHH HVMKVAEADWVVTHDSTRAVLDEAHAAGLIALPAERLIVVGGALGGAHDWAELASEPQDH HHHHHHCCCEEEECCCHHHHHHHHHCCCEEEECCCEEEEEECCCCCCHHHHHHHCCCHHC FTPPEPVGHDDLLNIQFTSGTSGFPKGCMLGQRYWISAGKVNAFRDGRIYRRILASTPFF CCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCEE YMDPQWLLLMTLYQRGTLFVAARQSTSRFSGWLEEHEIDFCLLPWVLHGMAPQQHDAQNR EECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCEEEHHHHHCCCCCCCCCCCCC VVRANIYGCPRDLHRGLEERFDLNAREAFGMTEIGPAMFAPIERADKVGSGSCGVPCPFR EEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCHHHHHCCCCCCCCCCCCHH ECRIVGEDGQPVARGEIGELQIRGPGIMLGYYNNPEATAEVLKDGWFSSGDLFRQDEDGF HCEEECCCCCCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCCCEECCCCE FYIVGRKKDMIRRSAENIAAREVETVLAAAPGVAEVAVVGVPDPLRGEEVKACIRLKEGV EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCC VADAAILEGIVATAQAGLAPFKVPRFYAFVEDFPRTASLKIAKPRITEGVADLRAGSFDR HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCC TSGEWIPATEGASA CCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Coenzyme A; D-carnitine; Coenzyme A; crotono-betaine; L-carnitine [C]
Specific reaction: Coenzyme A + D-carnitine = D-carnitinyl-CoA Coenzyme A + crotono-betaine = crotonobetainyl-CoA Coenzyme A + L-carnitine = L-carnitinyl-CoA [C]
General reaction: Ligases; Forming Carbon-Sulfur Bonds; Acid-Thiol Ligases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA