Click here to switch to the map view.

The map label for this gene is p49 [H]

Identifier: 77465530

GI number: 77465530

Start: 610665

End: 612260

Strand: Reverse

Name: p49 [H]

Synonym: RSP_3530

Alternate gene names: 77465530

Gene position: 612260-610665 (Counterclockwise)

Preceding gene: 77465531

Following gene: 77465529

Centisome position: 64.93

GC content: 67.11

Gene sequence:

>1596_bases
ATGAGCCCGCAGTATGATGCCATCATCGTGGGCGGCGGCCACAACGGGCTGACCTGCGGCGCCTACCTCGCCCGCGCCGG
CGTGAAGGTGCTGGTGGTGGAGCGCCAGCCCATGGTCGGCGGGGCGGCGGTGACGGGCGAGATCGCGCCCGGTTACCGCA
GCTCGCTCGCCTCCTATTATCAGGGGCTTCTGCAGCCCAAGGTCATCCTCGATCTCGAATTGCAGAAATACGGCTTCGAG
GTCATTCCCGCAGCCCCCACCGTCTTCGCGCTCGAGGGCGGGCGCACCTTCACGCTCTGGGACGACCCGGAGAAGTTCGC
CGCCGAGATCGCGAAATTCTCGAATGTCGATGGTGCGGCCTATGCCGGCTACCGGGCGCACATGCTGAAGATTGCGCCGC
ACATGAAGCAGCTTCTGTGGGAGGTGCCGGTCGATCCCGCCAGCGGCAAGATCCGGGATCTGAAACGGCTCGCGGGCTTC
GTCTGGCGCTTCCGCAAGGTCGGGCCGCAATTCTACGACATCTACAATCTCCTCACGATGAGCGCCTGGGACTATCTCTC
GCGCTGGTTCACCTCCGACGAAGTGAAGCTGGTTCTGGGCTTCTTCGCCGGCGGGGGCGGGGCCAATTCCAGCCTGAAGA
CGCCCGGCTCGGCCTATATGCTCGCGCGCGGCATCGTGCGCGACGGCGGCACCGCCGCGGGGCCCGCAGGCTTCATGAAG
GGCGGCATGGGCGCCATTTCCGAGGCGATCCGCCGCTCGGGCGAGGCGCATGGCATGGAGGTTCGCACCGCCTGCCCGGT
GGAGCGGATCCTCGTCGAGAACGGCCGCGCCGTGGGCGTGCGGCTGGAGGGCGGCGAGGAGATCCGCTCGAAGATCGTGA
TCGCCAATGCCACCGCCCGCACCACCTTCACGAAGCTCCTCGATCCCGCCGAGCTGCCCGAGGAGTTCAACCGCGACATC
CGCAACATCCGCTGCGAAAGCACGGTCTTCCGGGTCAATCTGGCTCTGTCGGCGCTGCCCGAGGCCCCGGTCTTCGGCCA
GACCAATCCGCAGGGCTCCATCGTGCCCCAGATGACCGTTGCGCCGAACGTGGCCTACATGGAGCGGGCCTGGCATCAGG
CGCAGGGCGGCGAGATCGCCGAGGCACCCTTCCTGATCGTCAAGGTGCCCTCGATGGTGGATCCGACGCTCGCGCCCGAG
GGGCATCACATCATGAATGTCTTCGGTGGACATGCGCCCTACACGCTCGCGCGGGGCGACTGGGACAGCCGCCGCGAAGA
GCTGTGGGGCCGGGTGCTCGCGGTGCTGAAGACCCAGTTCCCCGACATCGAGAGCAGGATCCTGCACCGCCAGATCATGA
CGCCGCTGGATCTCGAGCGGATCTTCGATCTGCCGAACGGCCATGTCCACCACGGCGAGATCAGCGCGGACCAGATGTTC
TTCCGCCGTCCCTCGCCGCAGTTCGCCGATTACCGCAGCCCGGTGGACCGTCTCTATCAGGCCTCGGCTTCGGTCCATCC
CGGCGGCGGCGTGACCGGCGTGCCGGGGCACAATGCGGCCAAGGTGATCCTCGAAGACCGCCGGAAGTGGAGCTGA

Upstream 100 bases:

>100_bases
TCGCCAAGCCCCGGATCACCGAAGGCGTGGCCGACCTGCGCGCGGGCAGCTTTGACCGCACCAGCGGGGAATGGATCCCC
GCGACCGAGGGAGCCTCCGC

Downstream 100 bases:

>100_bases
GCCGATGCTGATCGATTTTTCCTCGCGCCCGCCGCACCCGGATTTCTCGCCCCCCGCCCCGCATCTGCAGAACTACCGCA
GGGTCTATCAGGCGAGCGAA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MSPQYDAIIVGGGHNGLTCGAYLARAGVKVLVVERQPMVGGAAVTGEIAPGYRSSLASYYQGLLQPKVILDLELQKYGFE
VIPAAPTVFALEGGRTFTLWDDPEKFAAEIAKFSNVDGAAYAGYRAHMLKIAPHMKQLLWEVPVDPASGKIRDLKRLAGF
VWRFRKVGPQFYDIYNLLTMSAWDYLSRWFTSDEVKLVLGFFAGGGGANSSLKTPGSAYMLARGIVRDGGTAAGPAGFMK
GGMGAISEAIRRSGEAHGMEVRTACPVERILVENGRAVGVRLEGGEEIRSKIVIANATARTTFTKLLDPAELPEEFNRDI
RNIRCESTVFRVNLALSALPEAPVFGQTNPQGSIVPQMTVAPNVAYMERAWHQAQGGEIAEAPFLIVKVPSMVDPTLAPE
GHHIMNVFGGHAPYTLARGDWDSRREELWGRVLAVLKTQFPDIESRILHRQIMTPLDLERIFDLPNGHVHHGEISADQMF
FRRPSPQFADYRSPVDRLYQASASVHPGGGVTGVPGHNAAKVILEDRRKWS

Sequences:

>Translated_531_residues
MSPQYDAIIVGGGHNGLTCGAYLARAGVKVLVVERQPMVGGAAVTGEIAPGYRSSLASYYQGLLQPKVILDLELQKYGFE
VIPAAPTVFALEGGRTFTLWDDPEKFAAEIAKFSNVDGAAYAGYRAHMLKIAPHMKQLLWEVPVDPASGKIRDLKRLAGF
VWRFRKVGPQFYDIYNLLTMSAWDYLSRWFTSDEVKLVLGFFAGGGGANSSLKTPGSAYMLARGIVRDGGTAAGPAGFMK
GGMGAISEAIRRSGEAHGMEVRTACPVERILVENGRAVGVRLEGGEEIRSKIVIANATARTTFTKLLDPAELPEEFNRDI
RNIRCESTVFRVNLALSALPEAPVFGQTNPQGSIVPQMTVAPNVAYMERAWHQAQGGEIAEAPFLIVKVPSMVDPTLAPE
GHHIMNVFGGHAPYTLARGDWDSRREELWGRVLAVLKTQFPDIESRILHRQIMTPLDLERIFDLPNGHVHHGEISADQMF
FRRPSPQFADYRSPVDRLYQASASVHPGGGVTGVPGHNAAKVILEDRRKWS
>Mature_530_residues
SPQYDAIIVGGGHNGLTCGAYLARAGVKVLVVERQPMVGGAAVTGEIAPGYRSSLASYYQGLLQPKVILDLELQKYGFEV
IPAAPTVFALEGGRTFTLWDDPEKFAAEIAKFSNVDGAAYAGYRAHMLKIAPHMKQLLWEVPVDPASGKIRDLKRLAGFV
WRFRKVGPQFYDIYNLLTMSAWDYLSRWFTSDEVKLVLGFFAGGGGANSSLKTPGSAYMLARGIVRDGGTAAGPAGFMKG
GMGAISEAIRRSGEAHGMEVRTACPVERILVENGRAVGVRLEGGEEIRSKIVIANATARTTFTKLLDPAELPEEFNRDIR
NIRCESTVFRVNLALSALPEAPVFGQTNPQGSIVPQMTVAPNVAYMERAWHQAQGGEIAEAPFLIVKVPSMVDPTLAPEG
HHIMNVFGGHAPYTLARGDWDSRREELWGRVLAVLKTQFPDIESRILHRQIMTPLDLERIFDLPNGHVHHGEISADQMFF
RRPSPQFADYRSPVDRLYQASASVHPGGGVTGVPGHNAAKVILEDRRKWS

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=552, Percent_Identity=36.7753623188406, Blast_Score=325, Evalue=5e-89,
Organism=Caenorhabditis elegans, GI17540238, Length=529, Percent_Identity=35.3497164461248, Blast_Score=305, Evalue=4e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58077; Mature: 57946

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPQYDAIIVGGGHNGLTCGAYLARAGVKVLVVERQPMVGGAAVTGEIAPGYRSSLASYY
CCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHH
QGLLQPKVILDLELQKYGFEVIPAAPTVFALEGGRTFTLWDDPEKFAAEIAKFSNVDGAA
HHHCCCEEEEEEEHHHCCCEEECCCCEEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCE
YAGYRAHMLKIAPHMKQLLWEVPVDPASGKIRDLKRLAGFVWRFRKVGPQFYDIYNLLTM
ECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SAWDYLSRWFTSDEVKLVLGFFAGGGGANSSLKTPGSAYMLARGIVRDGGTAAGPAGFMK
HHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
GGMGAISEAIRRSGEAHGMEVRTACPVERILVENGRAVGVRLEGGEEIRSKIVIANATAR
CCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCCCEEEEEECCCHHHCCEEEEEECCHH
TTFTKLLDPAELPEEFNRDIRNIRCESTVFRVNLALSALPEAPVFGQTNPQGSIVPQMTV
HHHHHHCCHHCCHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEC
APNVAYMERAWHQAQGGEIAEAPFLIVKVPSMVDPTLAPEGHHIMNVFGGHAPYTLARGD
CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
WDSRREELWGRVLAVLKTQFPDIESRILHRQIMTPLDLERIFDLPNGHVHHGEISADQMF
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEECCCCCHHHHH
FRRPSPQFADYRSPVDRLYQASASVHPGGGVTGVPGHNAAKVILEDRRKWS
HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SPQYDAIIVGGGHNGLTCGAYLARAGVKVLVVERQPMVGGAAVTGEIAPGYRSSLASYY
CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHH
QGLLQPKVILDLELQKYGFEVIPAAPTVFALEGGRTFTLWDDPEKFAAEIAKFSNVDGAA
HHHCCCEEEEEEEHHHCCCEEECCCCEEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCE
YAGYRAHMLKIAPHMKQLLWEVPVDPASGKIRDLKRLAGFVWRFRKVGPQFYDIYNLLTM
ECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SAWDYLSRWFTSDEVKLVLGFFAGGGGANSSLKTPGSAYMLARGIVRDGGTAAGPAGFMK
HHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
GGMGAISEAIRRSGEAHGMEVRTACPVERILVENGRAVGVRLEGGEEIRSKIVIANATAR
CCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCCCEEEEEECCCHHHCCEEEEEECCHH
TTFTKLLDPAELPEEFNRDIRNIRCESTVFRVNLALSALPEAPVFGQTNPQGSIVPQMTV
HHHHHHCCHHCCHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEC
APNVAYMERAWHQAQGGEIAEAPFLIVKVPSMVDPTLAPEGHHIMNVFGGHAPYTLARGD
CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
WDSRREELWGRVLAVLKTQFPDIESRILHRQIMTPLDLERIFDLPNGHVHHGEISADQMF
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEECCCCCHHHHH
FRRPSPQFADYRSPVDRLYQASASVHPGGGVTGVPGHNAAKVILEDRRKWS
HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]