| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
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The map label for this gene is fct [H]
Identifier: 77465419
GI number: 77465419
Start: 483781
End: 485928
Strand: Direct
Name: fct [H]
Synonym: RSP_3417
Alternate gene names: 77465419
Gene position: 483781-485928 (Clockwise)
Preceding gene: 77465414
Following gene: 77465421
Centisome position: 51.3
GC content: 67.41
Gene sequence:
>2148_bases ATGACCCCCCGACACGCGGACAGATCGCGCCTCCTCCTCCGTCATCCCTGCCTCAGGGCGCTCCTGCTCGGAGGGTCGGC ACTGGTGGCCTTGCCCACGGTCCTCCGCGCCCAGGATGCGGCGGACGACGCGGCCGCGGGCGCCTTCCGCCTCTCGCCCA TCATCGTGGATGCGGCCGCCGCGGCCGACGACGATGCCCGTTCGGTCGTGGCGCAGGAGCTCTGGGTCGGCGGCAAGGTC GCGACCAGCCTGCTCGACACGCCCGCCTCGGTGTCGGTCGTGACCCAGGCCGAGATCCGGGCGCGCGCCGCCACCACCAC CGAGGAGGTGCTGCAATACTCCGCGGGCATCGTCACCGACTATTACGGCAGCGACGACCGCAACGACTATTTCCTCGTCC GCGGCTTTCAGGCCTCGACCTACCGCGACGGGCTGACGCTGGGCTCGATGCGCGGCGTGCGCGAGGAGCCCTATGCCTAC GAGCGGATCGAGGTGCTGAAGGGCGCGAACTCGACCCTGTTCGGCGTCTCCGATCCGGGCGGCTCGGTGAATTTCGTGAC CAAGGTGCCGCAGTTCACCCGCTTCGGCGAGGTCTACGGCCAGATCGGCACCAACGACCACAGGGAACTGGGCTTCGATC TGGGCGACGTGCTGAACGAGCAGGGGACGCTCGCCTACCGCTTCACCGGCAAGGTGAAGGACAGCGCGCTCGACTATGAC ACGTCGCGCGACGACGACGCTTTCCTGATGGGCGGTCTCACCTGGGCGCCGACCGAGGCCACCACGTTGACGCTGGTCTA CGACCATCTGAAGCGCGACGGCACGCCGAACAGCGGCGGCTATCCGCTCGACCGCGAATACGATCGCGGCGACTTCTTCG GCGAGGCCGACTTCAACGATCATGATGTCGCGCGCGACACGCTGACGGCCATGCTGCGCCACGATTTCGGCGGCGGGCTG AGCCTGACCGCGAACCTGCGCTACAGCGACCTCGCCGACGATTTCGGCTATATCTACCTGTCGGATTCGGCCTCTCGCGT GGGCACCGAGCTCTCGCGCTTCTATTTCGGCACCGACAGCACGGCCGAAGAGCTGATCGGCAACGCCATCCTGCAATATG ACACGAGCTTCGGCAGCACCGACAGCAGCACGCTGGTCGGGATCGAGTATCGCGACGCGGCGCTCTCCTCGGCGTCGTTC TACGGTGGGGCGGGCACCATCGACATCGCGACGGGGATCGCGACCGGCGTGCCCTCGAACCTCGCGCCCTACGAGACACG CAAGAGCGACTACACGACGAAGTCGGTGTTCCTGCAGCAGAACCTGTCCTTCGCCGACCGGCTGGTGGCGACCGTGGGCC TGCGGCACGACTGGCTCGACCTTAGGTCCCGCGGCACAGCTTCGGGCACGGCCTTCGACGACAGCGACGATTTCTCGGAG ACCTCAGTCCGCGGTGCGCTGACCTACAAGGTCACCGACGAGGTCTCGGCCTATGCGAGCTATGTGGAATCGGTGGCGCC GCCCTCCATCGGGGTCGAGCCCGAGCGCGGCGAGCAATATGAGATCGGCGTGAAATACCAGCCCGCAGGCAGCCGGGCGC TCCTGTCGGCGGCGATCTTCGACCTGACCCGGCAGGACATGACGATCCCGGTCGTTCTCGGCGACGGCACCATCGTGCGC GAGGTGGTGGGCGAGACGCGCGTGCGCGGCTTCGAGATCGAGGGCAAGGCCGAGATCGCCGAGAACTGGGACGTGATCGC GGCCTATTCCTATCAGGATGCCGAGCTCACGCGGGCGGTGGTGCGCGGCACCGACGTGTCGGGCAACCAGTTCGCCAACG TGCCGAAGACCATGGCCTCGCTCTGGGTGAACTACACCCTGCCGGGACGGGCGCGCGGCGGCGATATGACCTTCGGCCTC GGCGCCCGCTACATCGGCAGCTATCAGTTCGCGGAAACGAACGCGACCGGCGAGAGCGACGCCACGACGCTCTTCGACGC GGCCTTCAGCTACGACATCGCCGAGAACACCGGCCTGTCCGTCAATGTGAGCAACCTCTTCGACGAGCAGCATGTCGTGG GTCGCGGCACGGCCGACTATTACAACCCGGGCCGCACCGTTACGGCCACGCTGCGCCGCACCTGGTGA
Upstream 100 bases:
>100_bases GTGCCGGGCGCGGCGGCCCCCGGCGGTGCCGGGAGATCAGCCAGCGGATGGGGCAGCCCGTCGGGCCAGCGCGCAGAGAC CCTCAACCAGTGGAACGCCC
Downstream 100 bases:
>100_bases GCCGCCGCGCGGGCCCTCCTCGGACCTGTGGCGACGGTCCCGCATCAGACCGGGCCGCCGCCTTGGTGGCTGCTGCGCGG ACGGCCTCGGACCCGGGGCG
Product: TonB dependent outer membrane ferrichrome-iron receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 715; Mature: 714
Protein sequence:
>715_residues MTPRHADRSRLLLRHPCLRALLLGGSALVALPTVLRAQDAADDAAAGAFRLSPIIVDAAAAADDDARSVVAQELWVGGKV ATSLLDTPASVSVVTQAEIRARAATTTEEVLQYSAGIVTDYYGSDDRNDYFLVRGFQASTYRDGLTLGSMRGVREEPYAY ERIEVLKGANSTLFGVSDPGGSVNFVTKVPQFTRFGEVYGQIGTNDHRELGFDLGDVLNEQGTLAYRFTGKVKDSALDYD TSRDDDAFLMGGLTWAPTEATTLTLVYDHLKRDGTPNSGGYPLDREYDRGDFFGEADFNDHDVARDTLTAMLRHDFGGGL SLTANLRYSDLADDFGYIYLSDSASRVGTELSRFYFGTDSTAEELIGNAILQYDTSFGSTDSSTLVGIEYRDAALSSASF YGGAGTIDIATGIATGVPSNLAPYETRKSDYTTKSVFLQQNLSFADRLVATVGLRHDWLDLRSRGTASGTAFDDSDDFSE TSVRGALTYKVTDEVSAYASYVESVAPPSIGVEPERGEQYEIGVKYQPAGSRALLSAAIFDLTRQDMTIPVVLGDGTIVR EVVGETRVRGFEIEGKAEIAENWDVIAAYSYQDAELTRAVVRGTDVSGNQFANVPKTMASLWVNYTLPGRARGGDMTFGL GARYIGSYQFAETNATGESDATTLFDAAFSYDIAENTGLSVNVSNLFDEQHVVGRGTADYYNPGRTVTATLRRTW
Sequences:
>Translated_715_residues MTPRHADRSRLLLRHPCLRALLLGGSALVALPTVLRAQDAADDAAAGAFRLSPIIVDAAAAADDDARSVVAQELWVGGKV ATSLLDTPASVSVVTQAEIRARAATTTEEVLQYSAGIVTDYYGSDDRNDYFLVRGFQASTYRDGLTLGSMRGVREEPYAY ERIEVLKGANSTLFGVSDPGGSVNFVTKVPQFTRFGEVYGQIGTNDHRELGFDLGDVLNEQGTLAYRFTGKVKDSALDYD TSRDDDAFLMGGLTWAPTEATTLTLVYDHLKRDGTPNSGGYPLDREYDRGDFFGEADFNDHDVARDTLTAMLRHDFGGGL SLTANLRYSDLADDFGYIYLSDSASRVGTELSRFYFGTDSTAEELIGNAILQYDTSFGSTDSSTLVGIEYRDAALSSASF YGGAGTIDIATGIATGVPSNLAPYETRKSDYTTKSVFLQQNLSFADRLVATVGLRHDWLDLRSRGTASGTAFDDSDDFSE TSVRGALTYKVTDEVSAYASYVESVAPPSIGVEPERGEQYEIGVKYQPAGSRALLSAAIFDLTRQDMTIPVVLGDGTIVR EVVGETRVRGFEIEGKAEIAENWDVIAAYSYQDAELTRAVVRGTDVSGNQFANVPKTMASLWVNYTLPGRARGGDMTFGL GARYIGSYQFAETNATGESDATTLFDAAFSYDIAENTGLSVNVSNLFDEQHVVGRGTADYYNPGRTVTATLRRTW >Mature_714_residues TPRHADRSRLLLRHPCLRALLLGGSALVALPTVLRAQDAADDAAAGAFRLSPIIVDAAAAADDDARSVVAQELWVGGKVA TSLLDTPASVSVVTQAEIRARAATTTEEVLQYSAGIVTDYYGSDDRNDYFLVRGFQASTYRDGLTLGSMRGVREEPYAYE RIEVLKGANSTLFGVSDPGGSVNFVTKVPQFTRFGEVYGQIGTNDHRELGFDLGDVLNEQGTLAYRFTGKVKDSALDYDT SRDDDAFLMGGLTWAPTEATTLTLVYDHLKRDGTPNSGGYPLDREYDRGDFFGEADFNDHDVARDTLTAMLRHDFGGGLS LTANLRYSDLADDFGYIYLSDSASRVGTELSRFYFGTDSTAEELIGNAILQYDTSFGSTDSSTLVGIEYRDAALSSASFY GGAGTIDIATGIATGVPSNLAPYETRKSDYTTKSVFLQQNLSFADRLVATVGLRHDWLDLRSRGTASGTAFDDSDDFSET SVRGALTYKVTDEVSAYASYVESVAPPSIGVEPERGEQYEIGVKYQPAGSRALLSAAIFDLTRQDMTIPVVLGDGTIVRE VVGETRVRGFEIEGKAEIAENWDVIAAYSYQDAELTRAVVRGTDVSGNQFANVPKTMASLWVNYTLPGRARGGDMTFGLG ARYIGSYQFAETNATGESDATTLFDAAFSYDIAENTGLSVNVSNLFDEQHVVGRGTADYYNPGRTVTATLRRTW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=700, Percent_Identity=28.4285714285714, Blast_Score=228, Evalue=7e-61, Organism=Escherichia coli, GI1787344, Length=739, Percent_Identity=24.4925575101488, Blast_Score=112, Evalue=1e-25, Organism=Escherichia coli, GI1787024, Length=252, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77385; Mature: 77254
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPRHADRSRLLLRHPCLRALLLGGSALVALPTVLRAQDAADDAAAGAFRLSPIIVDAAA CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCEEEECEEEEEEHH AADDDARSVVAQELWVGGKVATSLLDTPASVSVVTQAEIRARAATTTEEVLQYSAGIVTD CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCCHHHHHHHHCCCEEE YYGSDDRNDYFLVRGFQASTYRDGLTLGSMRGVREEPYAYERIEVLKGANSTLFGVSDPG ECCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCC GSVNFVTKVPQFTRFGEVYGQIGTNDHRELGFDLGDVLNEQGTLAYRFTGKVKDSALDYD CCEEEEECCCCHHHHHHHHHCCCCCCCHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCC TSRDDDAFLMGGLTWAPTEATTLTLVYDHLKRDGTPNSGGYPLDREYDRGDFFGEADFND CCCCCCEEEECCEEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HDVARDTLTAMLRHDFGGGLSLTANLRYSDLADDFGYIYLSDSASRVGTELSRFYFGTDS HHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCEEEECCCHHHHHHHHHHEEECCCC TAEELIGNAILQYDTSFGSTDSSTLVGIEYRDAALSSASFYGGAGTIDIATGIATGVPSN HHHHHHCCCEEEECCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCEEEEHHHHHHCCCCC LAPYETRKSDYTTKSVFLQQNLSFADRLVATVGLRHDWLDLRSRGTASGTAFDDSDDFSE CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCC TSVRGALTYKVTDEVSAYASYVESVAPPSIGVEPERGEQYEIGVKYQPAGSRALLSAAIF CCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH DLTRQDMTIPVVLGDGTIVREVVGETRVRGFEIEGKAEIAENWDVIAAYSYQDAELTRAV HHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEECCCHHHCCCCCEEEEEECCHHHHHHHH VRGTDVSGNQFANVPKTMASLWVNYTLPGRARGGDMTFGLGARYIGSYQFAETNATGESD HHCCCCCCCCCCCHHHHHHHHEEEEECCCCCCCCCEEEECCHHHHCCEEEEECCCCCCCC ATTLFDAAFSYDIAENTGLSVNVSNLFDEQHVVGRGTADYYNPGRTVTATLRRTW CHHHHHHHHEEECCCCCCCEEEHHHHCCCCHHCCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure TPRHADRSRLLLRHPCLRALLLGGSALVALPTVLRAQDAADDAAAGAFRLSPIIVDAAA CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCEEEECEEEEEEHH AADDDARSVVAQELWVGGKVATSLLDTPASVSVVTQAEIRARAATTTEEVLQYSAGIVTD CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCCHHHHHHHHCCCEEE YYGSDDRNDYFLVRGFQASTYRDGLTLGSMRGVREEPYAYERIEVLKGANSTLFGVSDPG ECCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCC GSVNFVTKVPQFTRFGEVYGQIGTNDHRELGFDLGDVLNEQGTLAYRFTGKVKDSALDYD CCEEEEECCCCHHHHHHHHHCCCCCCCHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCC TSRDDDAFLMGGLTWAPTEATTLTLVYDHLKRDGTPNSGGYPLDREYDRGDFFGEADFND CCCCCCEEEECCEEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HDVARDTLTAMLRHDFGGGLSLTANLRYSDLADDFGYIYLSDSASRVGTELSRFYFGTDS HHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCEEEECCCHHHHHHHHHHEEECCCC TAEELIGNAILQYDTSFGSTDSSTLVGIEYRDAALSSASFYGGAGTIDIATGIATGVPSN HHHHHHCCCEEEECCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCEEEEHHHHHHCCCCC LAPYETRKSDYTTKSVFLQQNLSFADRLVATVGLRHDWLDLRSRGTASGTAFDDSDDFSE CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCC TSVRGALTYKVTDEVSAYASYVESVAPPSIGVEPERGEQYEIGVKYQPAGSRALLSAAIF CCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH DLTRQDMTIPVVLGDGTIVREVVGETRVRGFEIEGKAEIAENWDVIAAYSYQDAELTRAV HHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEECCCHHHCCCCCEEEEEECCHHHHHHHH VRGTDVSGNQFANVPKTMASLWVNYTLPGRARGGDMTFGLGARYIGSYQFAETNATGESD HHCCCCCCCCCCCHHHHHHHHEEEEECCCCCCCCCEEEECCHHHHCCEEEEECCCCCCCC ATTLFDAAFSYDIAENTGLSVNVSNLFDEQHVVGRGTADYYNPGRTVTATLRRTW CHHHHHHHHEEECCCCCCCEEEHHHHCCCCHHCCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]