| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
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The map label for this gene is dppD [H]
Identifier: 77465246
GI number: 77465246
Start: 293109
End: 293957
Strand: Direct
Name: dppD [H]
Synonym: RSP_3235
Alternate gene names: 77465246
Gene position: 293109-293957 (Clockwise)
Preceding gene: 77465245
Following gene: 77465247
Centisome position: 31.08
GC content: 67.73
Gene sequence:
>849_bases ATGGCGCTACTCGAAATCCGCAACCTCTCCGTCAGCTTCGCCACCTCGACCGGCCGCTTCCATGCCGTGCGGGGCATCGA CATGACCGTCAACAGCCGCGAGGTTCTGGCGGTCGTGGGCGAAAGCGGCTCGGGCAAGTCGGTGGCGATGCTCGCCACCA TGGGCCTCCTGCCCGCCACCGCCACGGTCGAGGCCGACATGCTGCGCTTCGACGGCCGCGACATGCTCACCATGTCGGAC GCCGACCGGCGCAAGCTCATCGGGCGCGACATCTCGATGATCTTCCAGGAGCCGATCGCCTCGCTGAACCCCTGCTTCAC GGTGGGCTTCCAGCTCGAGGAGGTGCTGCGCGTCCATCTGGGCCTCGGGGCCCGCGAGCGGCGCGCCCGCGCCATCGAGC TGTTCCAAGCGGTGGGCATCCCCGATCCCGAGGCGCGGCTCTCGTCCTACCCGCACCAGATGTCGGGCGGCCAGTGCCAG CGGGTGATGATCGCCATCGCCATCGCCTGCCAGCCGAAGCTCCTGATCGCCGACGAGCCCACGACCGCGCTCGACGTGAC GATCCAGAAGCAGATCCTCGACCTGCTGATGAAGCTGCAGGAGGATACCGGCATGGGCCTCATCATGATCACCCACGACA TGGGCGTGGTGGCCGAGACGGCCGACCGGGTGGTGGTCATGTACAAGGGCCGCAAGATGGAGGAGGCGGGCGTGCTCGAG ATCTTCGAGGCGCCGAAACATCCCTATACGCGGGCGCTCCTGTCGGCGCTGCCGGAGCTTGCCACCGGCGACCGGCTGCC CACCGTCTCGGATTTCATCGACACCGAAGCTCTGGCAGGAGGCGCGTGA
Upstream 100 bases:
>100_bases TTCCCCGGTCTCGCGATCCTCATCACCGTGCTCGCGATCAACCTCGTGGGCGACGGGCTGCGCGACGCGCTCGACCCGAA ACTGAAGCGGAGCTGAGCCG
Downstream 100 bases:
>100_bases TGGCCCCGGTTCTCGAAGCCCGCAACATCGTGCGCGACTATGCCGGCTCGGGCGGCCTCTTCCGCCGGGCCAAGCCCGTG CGCGCGCTGAAGGGCATCTC
Product: ABC peptide transporter, ATPase subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MALLEIRNLSVSFATSTGRFHAVRGIDMTVNSREVLAVVGESGSGKSVAMLATMGLLPATATVEADMLRFDGRDMLTMSD ADRRKLIGRDISMIFQEPIASLNPCFTVGFQLEEVLRVHLGLGARERRARAIELFQAVGIPDPEARLSSYPHQMSGGQCQ RVMIAIAIACQPKLLIADEPTTALDVTIQKQILDLLMKLQEDTGMGLIMITHDMGVVAETADRVVVMYKGRKMEEAGVLE IFEAPKHPYTRALLSALPELATGDRLPTVSDFIDTEALAGGA
Sequences:
>Translated_282_residues MALLEIRNLSVSFATSTGRFHAVRGIDMTVNSREVLAVVGESGSGKSVAMLATMGLLPATATVEADMLRFDGRDMLTMSD ADRRKLIGRDISMIFQEPIASLNPCFTVGFQLEEVLRVHLGLGARERRARAIELFQAVGIPDPEARLSSYPHQMSGGQCQ RVMIAIAIACQPKLLIADEPTTALDVTIQKQILDLLMKLQEDTGMGLIMITHDMGVVAETADRVVVMYKGRKMEEAGVLE IFEAPKHPYTRALLSALPELATGDRLPTVSDFIDTEALAGGA >Mature_281_residues ALLEIRNLSVSFATSTGRFHAVRGIDMTVNSREVLAVVGESGSGKSVAMLATMGLLPATATVEADMLRFDGRDMLTMSDA DRRKLIGRDISMIFQEPIASLNPCFTVGFQLEEVLRVHLGLGARERRARAIELFQAVGIPDPEARLSSYPHQMSGGQCQR VMIAIAIACQPKLLIADEPTTALDVTIQKQILDLLMKLQEDTGMGLIMITHDMGVVAETADRVVVMYKGRKMEEAGVLEI FEAPKHPYTRALLSALPELATGDRLPTVSDFIDTEALAGGA
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=29.045643153527, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI105990541, Length=213, Percent_Identity=25.3521126760563, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI42741659, Length=238, Percent_Identity=28.9915966386555, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4505771, Length=239, Percent_Identity=29.2887029288703, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9961252, Length=239, Percent_Identity=29.2887029288703, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI116734710, Length=232, Percent_Identity=25.4310344827586, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI148612844, Length=236, Percent_Identity=28.8135593220339, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI21536376, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI255708477, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI21536378, Length=242, Percent_Identity=26.8595041322314, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1789963, Length=261, Percent_Identity=55.9386973180077, Blast_Score=305, Evalue=3e-84, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=51.1363636363636, Blast_Score=253, Evalue=8e-69, Organism=Escherichia coli, GI48994883, Length=269, Percent_Identity=46.0966542750929, Blast_Score=236, Evalue=1e-63, Organism=Escherichia coli, GI1788506, Length=281, Percent_Identity=44.8398576512456, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI1787548, Length=270, Percent_Identity=42.2222222222222, Blast_Score=221, Evalue=3e-59, Organism=Escherichia coli, GI1787759, Length=258, Percent_Identity=42.6356589147287, Blast_Score=218, Evalue=4e-58, Organism=Escherichia coli, GI1787500, Length=267, Percent_Identity=43.0711610486891, Blast_Score=196, Evalue=1e-51, Organism=Escherichia coli, GI1789962, Length=270, Percent_Identity=39.6296296296296, Blast_Score=184, Evalue=6e-48, Organism=Escherichia coli, GI1787758, Length=263, Percent_Identity=38.4030418250951, Blast_Score=170, Evalue=7e-44, Organism=Escherichia coli, GI1789890, Length=253, Percent_Identity=39.9209486166008, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=34.0996168582375, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI48994997, Length=258, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789891, Length=240, Percent_Identity=37.5, Blast_Score=131, Evalue=4e-32, Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=32.8185328185328, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1786398, Length=258, Percent_Identity=32.5581395348837, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1789672, Length=258, Percent_Identity=30.6201550387597, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787029, Length=249, Percent_Identity=33.7349397590361, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=33.8983050847458, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1789032, Length=243, Percent_Identity=31.2757201646091, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787370, Length=236, Percent_Identity=31.7796610169492, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787105, Length=229, Percent_Identity=35.3711790393013, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788761, Length=264, Percent_Identity=32.1969696969697, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790162, Length=262, Percent_Identity=27.0992366412214, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=35, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788644, Length=255, Percent_Identity=30.5882352941176, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786872, Length=260, Percent_Identity=30, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI87081791, Length=249, Percent_Identity=32.5301204819277, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87081834, Length=232, Percent_Identity=32.7586206896552, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87081709, Length=243, Percent_Identity=27.9835390946502, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787712, Length=264, Percent_Identity=28.4090909090909, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=29.6137339055794, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788450, Length=275, Percent_Identity=25.8181818181818, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786253, Length=209, Percent_Identity=31.5789473684211, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=33.495145631068, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789873, Length=226, Percent_Identity=28.3185840707965, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87082267, Length=245, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786654, Length=243, Percent_Identity=27.9835390946502, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=28.2296650717703, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=240, Percent_Identity=28.75, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790467, Length=245, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789593, Length=246, Percent_Identity=28.0487804878049, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48995001, Length=240, Percent_Identity=28.75, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=25.2212389380531, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=28.2700421940928, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=220, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787972, Length=240, Percent_Identity=27.5, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786803, Length=233, Percent_Identity=26.1802575107296, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193209708, Length=244, Percent_Identity=29.0983606557377, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71992290, Length=240, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17569143, Length=230, Percent_Identity=28.695652173913, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI212646699, Length=247, Percent_Identity=25.1012145748988, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI115534520, Length=234, Percent_Identity=29.9145299145299, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567269, Length=226, Percent_Identity=28.7610619469027, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71983516, Length=227, Percent_Identity=23.3480176211454, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983510, Length=227, Percent_Identity=23.3480176211454, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983523, Length=227, Percent_Identity=23.3480176211454, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17541710, Length=224, Percent_Identity=29.0178571428571, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567265, Length=264, Percent_Identity=28.030303030303, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115535101, Length=213, Percent_Identity=30.5164319248826, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193202349, Length=235, Percent_Identity=24.6808510638298, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71984940, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17569145, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193208177, Length=238, Percent_Identity=26.0504201680672, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=180, Percent_Identity=27.2222222222222, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI28574150, Length=236, Percent_Identity=25.4237288135593, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007328, Length=236, Percent_Identity=25.4237288135593, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24643674, Length=228, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24641565, Length=237, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17136662, Length=224, Percent_Identity=29.4642857142857, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI19920532, Length=220, Percent_Identity=26.8181818181818, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24580930, Length=220, Percent_Identity=26.8181818181818, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30599; Mature: 30468
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLEIRNLSVSFATSTGRFHAVRGIDMTVNSREVLAVVGESGSGKSVAMLATMGLLPAT CCEEEEECCEEEEEECCCCEEEEECEEEEECCCEEEEEEECCCCCCEEEEEEHHCCCCCC ATVEADMLRFDGRDMLTMSDADRRKLIGRDISMIFQEPIASLNPCFTVGFQLEEVLRVHL HHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHH GLGARERRARAIELFQAVGIPDPEARLSSYPHQMSGGQCQRVMIAIAIACQPKLLIADEP CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHEEEEEEEECCCEEEEECCC TTALDVTIQKQILDLLMKLQEDTGMGLIMITHDMGVVAETADRVVVMYKGRKMEEAGVLE CCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCHHH IFEAPKHPYTRALLSALPELATGDRLPTVSDFIDTEALAGGA HHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure ALLEIRNLSVSFATSTGRFHAVRGIDMTVNSREVLAVVGESGSGKSVAMLATMGLLPAT CEEEEECCEEEEEECCCCEEEEECEEEEECCCEEEEEEECCCCCCEEEEEEHHCCCCCC ATVEADMLRFDGRDMLTMSDADRRKLIGRDISMIFQEPIASLNPCFTVGFQLEEVLRVHL HHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHH GLGARERRARAIELFQAVGIPDPEARLSSYPHQMSGGQCQRVMIAIAIACQPKLLIADEP CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHEEEEEEEECCCEEEEECCC TTALDVTIQKQILDLLMKLQEDTGMGLIMITHDMGVVAETADRVVVMYKGRKMEEAGVLE CCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCHHH IFEAPKHPYTRALLSALPELATGDRLPTVSDFIDTEALAGGA HHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]