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The map label for this gene is yqhC [H]

Identifier: 77465216

GI number: 77465216

Start: 255489

End: 256400

Strand: Direct

Name: yqhC [H]

Synonym: RSP_3202

Alternate gene names: 77465216

Gene position: 255489-256400 (Clockwise)

Preceding gene: 77465214

Following gene: 77465217

Centisome position: 27.09

GC content: 72.37

Gene sequence:

>912_bases
ATGGATGGATCGCGACTCGACAGGCTGAAGCGGCTCACGCGCGAGCAATGGGACCGGCACGGGCGGCAGGGGCCGCTCGA
GGGGCTGAGGATTTCCTGCGAAACCGCTCCGACCGGGCCGATCCACACGGTCTACGACCCCTCGTTCTGCGTCGTGCTGC
AGGGCGCGAAGACCAGCCGTCTCGGCGACCGCGCCTTCCGCTACGATGCGGGGAAATGCCTGATCGCCTCGCTCGAGGTG
CCGATCCGCGCCGAGATCACCGAGGCCGCGCCGGGCGCGCCCTATCTCGCCTTCGCGCTCACGCTCGACCCAGCAACGGT
GGCCGACCTGATCCTCGGGCAGGGAAGCCTGCCGATGGAGCCCGGGATGCCGTCCCCGGCGCTCGCCGTGCATCCGCTGA
CCGAGGAGCTGATCGGGCCGCTCGAGCGGCTTCTTGCGCTGCCGGCGCGGCCGCAGGACATCCCCGTGCTCGCGCCGATG
ATCCGCCGCGAGATCGTCTGGCGGCTGCTGACCGGCCCGCAGGGCGCGGCCCTGCGCCAGATCGGGCTCGCCGACAGCCG
CATGTCGCGCATCGGCCGGGCCATCGCCTGGATCCGCGACCATTTCGCCGAGCCGCTCAGCATCGAGCGGCTGTCGGGCC
TCGCGGGGATGAGCCCGGCCACCTTCCACCGCCATTTCAAGGCGGCGACGGCCATGACCCCGGTGCAGTTCCAGAAGAGC
CTGCGCCTGCAGGAGGCGCGGCGGCTGCTCCTCTCGGACGGGGCCGACGTGGCGCGGGTGGGCTTCGCCATCGGCTACGA
GAGCCCGTCGCAGTTCAGCCGCGAATATCGCCGCCTGTTCGGTGCGCCTCCCGGCCGCGACGGGGCCCAGATCCGCCGCG
AGATCCGGGCGCCCGCGTCCCTCCGCCTCTAG

Upstream 100 bases:

>100_bases
CGGTTCCCGCGACGCCGATCCTCTCGAAATGCTGCACGATCCTCTCAAGCGTGGGCGGCGGCGCTTGGGGCGGGCCGTGG
GCTCGGCTAGGATCCGGGGC

Downstream 100 bases:

>100_bases
GCGGCCCGTTCGGGCAGCAGTCGCCATGGCATCCCGCGTGCCCGGGAACGGACACGCCCCAATCAACCGCGTCTCCCTCG
CGAGACCCGGCAGAGACTTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDGSRLDRLKRLTREQWDRHGRQGPLEGLRISCETAPTGPIHTVYDPSFCVVLQGAKTSRLGDRAFRYDAGKCLIASLEV
PIRAEITEAAPGAPYLAFALTLDPATVADLILGQGSLPMEPGMPSPALAVHPLTEELIGPLERLLALPARPQDIPVLAPM
IRREIVWRLLTGPQGAALRQIGLADSRMSRIGRAIAWIRDHFAEPLSIERLSGLAGMSPATFHRHFKAATAMTPVQFQKS
LRLQEARRLLLSDGADVARVGFAIGYESPSQFSREYRRLFGAPPGRDGAQIRREIRAPASLRL

Sequences:

>Translated_303_residues
MDGSRLDRLKRLTREQWDRHGRQGPLEGLRISCETAPTGPIHTVYDPSFCVVLQGAKTSRLGDRAFRYDAGKCLIASLEV
PIRAEITEAAPGAPYLAFALTLDPATVADLILGQGSLPMEPGMPSPALAVHPLTEELIGPLERLLALPARPQDIPVLAPM
IRREIVWRLLTGPQGAALRQIGLADSRMSRIGRAIAWIRDHFAEPLSIERLSGLAGMSPATFHRHFKAATAMTPVQFQKS
LRLQEARRLLLSDGADVARVGFAIGYESPSQFSREYRRLFGAPPGRDGAQIRREIRAPASLRL
>Mature_303_residues
MDGSRLDRLKRLTREQWDRHGRQGPLEGLRISCETAPTGPIHTVYDPSFCVVLQGAKTSRLGDRAFRYDAGKCLIASLEV
PIRAEITEAAPGAPYLAFALTLDPATVADLILGQGSLPMEPGMPSPALAVHPLTEELIGPLERLLALPARPQDIPVLAPM
IRREIVWRLLTGPQGAALRQIGLADSRMSRIGRAIAWIRDHFAEPLSIERLSGLAGMSPATFHRHFKAATAMTPVQFQKS
LRLQEARRLLLSDGADVARVGFAIGYESPSQFSREYRRLFGAPPGRDGAQIRREIRAPASLRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=287, Percent_Identity=32.7526132404181, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1790339, Length=142, Percent_Identity=32.3943661971831, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33257; Mature: 33257

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSRLDRLKRLTREQWDRHGRQGPLEGLRISCETAPTGPIHTVYDPSFCVVLQGAKTSR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCH
LGDRAFRYDAGKCLIASLEVPIRAEITEAAPGAPYLAFALTLDPATVADLILGQGSLPME
HCCHHHHCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCC
PGMPSPALAVHPLTEELIGPLERLLALPARPQDIPVLAPMIRREIVWRLLTGPQGAALRQ
CCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
IGLADSRMSRIGRAIAWIRDHFAEPLSIERLSGLAGMSPATFHRHFKAATAMTPVQFQKS
HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
LRLQEARRLLLSDGADVARVGFAIGYESPSQFSREYRRLFGAPPGRDGAQIRREIRAPAS
HHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
LRL
CCC
>Mature Secondary Structure
MDGSRLDRLKRLTREQWDRHGRQGPLEGLRISCETAPTGPIHTVYDPSFCVVLQGAKTSR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCH
LGDRAFRYDAGKCLIASLEVPIRAEITEAAPGAPYLAFALTLDPATVADLILGQGSLPME
HCCHHHHCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCC
PGMPSPALAVHPLTEELIGPLERLLALPARPQDIPVLAPMIRREIVWRLLTGPQGAALRQ
CCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
IGLADSRMSRIGRAIAWIRDHFAEPLSIERLSGLAGMSPATFHRHFKAATAMTPVQFQKS
HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
LRLQEARRLLLSDGADVARVGFAIGYESPSQFSREYRRLFGAPPGRDGAQIRREIRAPAS
HHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
LRL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]