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The map label for this gene is soxR [H]

Identifier: 77465170

GI number: 77465170

Start: 205804

End: 206700

Strand: Direct

Name: soxR [H]

Synonym: RSP_6165

Alternate gene names: 77465170

Gene position: 205804-206700 (Clockwise)

Preceding gene: 77465156

Following gene: 77465171

Centisome position: 21.82

GC content: 70.01

Gene sequence:

>897_bases
ATGTCGATCCGGATGCTCCGCACGCTGATCGCGGTCAGCGAGCACGGGACCTTCAGCGCGGCGGCGGAGTCGGTGTTCCT
GACCCATGCCGCGGTCAGCCAGCAGATGCAGAAGCTGGAAGAGGATTTCGGCATCCGCCTCTTCGACCGCTCGCGGCGCA
GCCCCGAACTGACGCCTCTGGGGCAGGCCTTCGTCAGCCGCGCGCGCGACGTGGTGGCGGCCTACGACGGGCTCGCGCTC
GCGGTGACGGGAGAGGGCAGCGTCGAGGGCACGATCCGGCTCGGCGCCGTGCCCACCACGCTGATCGGGCTCATCCCGGT
CGCGGTGACGCTGCTCAAGCGCGACTTTCCGGCGCTCAGCGTGACCATCGTGCCGGGGCTGACCACGAACCTCCTCCAGC
AGGTCGAGCGCGGCTCGCTCGATGCGGCGGTGCTCACGCGGCCCCATGTGGTGCCGCGGCGGATGGTCTGGAACCATGTG
GCCGACGAGCCGCTCGAGCTTCTGGCCTCGCACGACACGGCGAGCGACGACCCGCTGGAACTGCTGGCCACGCAGCCCTT
CATCCGCTTCTCGCGGCAAGCGGTGGTGGGCGGGCTGATCGAGGCCTGGCTCCAGCAGCGCCGGATCGAGGTGCGCGAGA
GCATGGAGCTCGAGAGCCTCGAGACGATCTCGAGCATGGTGCTGGCGAACCTCGGCGTCTCCATCGCGCCGCGTCCCTGT
GTCGATCACATCAACCCTCTGCCGCTCAAGCACATCCCGCTCGACGCGGGCGGGCTCCGACGCCAGCTCGGCCTCAGCAG
CCGGGCCGACAATGCGCGCCCGCGCGTCCTGCGCATCCTGCACGAGAAGCTGGTGCAGGCGGTGGGCATCGGCGTGCTCG
ACCCTTCTTCCCTCTGA

Upstream 100 bases:

>100_bases
TCCACCTGTTCCCATTGACAGGCTAATCGAAAGCTAATCTAATAAAAACAAATAAAAGCTGACATGTGATGTAAGAAAAT
CTGACGAAAGAGAGGGGCGG

Downstream 100 bases:

>100_bases
CGGAGCCCTTTCGTGACCCTCGACTTCCTCCTTCTCTTCGGGCTCGGCGCGGCGGCGGGCGGGTTCGTCAACGGGCTCGC
GGGCTTCGGCACGGCGCTCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSIRMLRTLIAVSEHGTFSAAAESVFLTHAAVSQQMQKLEEDFGIRLFDRSRRSPELTPLGQAFVSRARDVVAAYDGLAL
AVTGEGSVEGTIRLGAVPTTLIGLIPVAVTLLKRDFPALSVTIVPGLTTNLLQQVERGSLDAAVLTRPHVVPRRMVWNHV
ADEPLELLASHDTASDDPLELLATQPFIRFSRQAVVGGLIEAWLQQRRIEVRESMELESLETISSMVLANLGVSIAPRPC
VDHINPLPLKHIPLDAGGLRRQLGLSSRADNARPRVLRILHEKLVQAVGIGVLDPSSL

Sequences:

>Translated_298_residues
MSIRMLRTLIAVSEHGTFSAAAESVFLTHAAVSQQMQKLEEDFGIRLFDRSRRSPELTPLGQAFVSRARDVVAAYDGLAL
AVTGEGSVEGTIRLGAVPTTLIGLIPVAVTLLKRDFPALSVTIVPGLTTNLLQQVERGSLDAAVLTRPHVVPRRMVWNHV
ADEPLELLASHDTASDDPLELLATQPFIRFSRQAVVGGLIEAWLQQRRIEVRESMELESLETISSMVLANLGVSIAPRPC
VDHINPLPLKHIPLDAGGLRRQLGLSSRADNARPRVLRILHEKLVQAVGIGVLDPSSL
>Mature_297_residues
SIRMLRTLIAVSEHGTFSAAAESVFLTHAAVSQQMQKLEEDFGIRLFDRSRRSPELTPLGQAFVSRARDVVAAYDGLALA
VTGEGSVEGTIRLGAVPTTLIGLIPVAVTLLKRDFPALSVTIVPGLTTNLLQQVERGSLDAAVLTRPHVVPRRMVWNHVA
DEPLELLASHDTASDDPLELLATQPFIRFSRQAVVGGLIEAWLQQRRIEVRESMELESLETISSMVLANLGVSIAPRPCV
DHINPLPLKHIPLDAGGLRRQLGLSSRADNARPRVLRILHEKLVQAVGIGVLDPSSL

Specific function: Transcriptional repressor of soxA gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=307, Percent_Identity=28.3387622149837, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI145693105, Length=274, Percent_Identity=24.0875912408759, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082132, Length=248, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=248, Percent_Identity=28.6290322580645, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=252, Percent_Identity=25.7936507936508, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=143, Percent_Identity=27.972027972028, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=256, Percent_Identity=22.265625, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=304, Percent_Identity=23.6842105263158, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787530, Length=150, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32401; Mature: 32270

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRMLRTLIAVSEHGTFSAAAESVFLTHAAVSQQMQKLEEDFGIRLFDRSRRSPELTPL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCHH
GQAFVSRARDVVAAYDGLALAVTGEGSVEGTIRLGAVPTTLIGLIPVAVTLLKRDFPALS
HHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEE
VTIVPGLTTNLLQQVERGSLDAAVLTRPHVVPRRMVWNHVADEPLELLASHDTASDDPLE
EEEECCCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHH
LLATQPFIRFSRQAVVGGLIEAWLQQRRIEVRESMELESLETISSMVLANLGVSIAPRPC
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
VDHINPLPLKHIPLDAGGLRRQLGLSSRADNARPRVLRILHEKLVQAVGIGVLDPSSL
HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SIRMLRTLIAVSEHGTFSAAAESVFLTHAAVSQQMQKLEEDFGIRLFDRSRRSPELTPL
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCHH
GQAFVSRARDVVAAYDGLALAVTGEGSVEGTIRLGAVPTTLIGLIPVAVTLLKRDFPALS
HHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEE
VTIVPGLTTNLLQQVERGSLDAAVLTRPHVVPRRMVWNHVADEPLELLASHDTASDDPLE
EEEECCCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHH
LLATQPFIRFSRQAVVGGLIEAWLQQRRIEVRESMELESLETISSMVLANLGVSIAPRPC
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
VDHINPLPLKHIPLDAGGLRRQLGLSSRADNARPRVLRILHEKLVQAVGIGVLDPSSL
HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA