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The map label for this gene is ydcR [C]

Identifier: 77465039

GI number: 77465039

Start: 57004

End: 58374

Strand: Reverse

Name: ydcR [C]

Synonym: RSP_3026

Alternate gene names: 77465039

Gene position: 58374-57004 (Counterclockwise)

Preceding gene: 77465040

Following gene: 77465038

Centisome position: 6.19

GC content: 71.92

Gene sequence:

>1371_bases
ATGTGGCGGCCGCATCTCGTCGACACGGCGCGACTGAAATATCTCGGCATCGTCGATGCGCTCGAGGCCGACATCCGCGC
CGGACGGGTGACGCCGGGCGAGAGGCTTCCACCCCAGCGCGCCATTGCCGAGGCCCTGGGCGTGGACCTGACCACGGTCA
CGAGAGCCCTCAACGAGGCGCAGCGCCGCGGGCTCGTCTCGGCGCAGGTCGGCCGCGGGACCTTCGTACGCGACGAACCC
GCCGGCGACGAGGGCGGCGGCACTCCTCTCGATCTCAGCATGAACATTCCGCCGCAGCCCGCCGAGCCCGATCTGAGGCG
GATCCTGCCTCAGGGCATCGCATCCATCCTGACGAGCCCGCGCGGCACGCTCGCCATGCACTATCAGGAAAGCACCGGCG
CGCCCGCGGATCGCACGGCCGCCGCCTCCTGGCTGGCCGGACGCGTGGCCGGAGCCTCGGCCGACAGGATCGTCGTGACC
AGCGGCGCGCAGGCCGCACTCTTCGCCCTCTGCGCGCTGCTGCTCGGGCGCGGCGATGTCGTGGCGGCCGGGGCCGTGAC
CTATCCCGGCCTGAAGGCGGTCGCGGCGCAGCAGCACCTCGAGCTGGCGCCGGTGGCGATGGACGAACAGGGCATCCTCC
CCGAGGCGTTCGAGGCGGTCTGCCGCGAGCGGGCGCCGAAGCTCCTCTATCTCATCCCGTCGATCGACAATCCGACGACA
GCGACCTTGCCGGCCGACCGTCGCCGGGAGGTTGCCGCCGTGGCCCGCCGCCACGGTGTCCTGCTGATCGAGGACGACCC
CTACGCACCGCTGCGCTCCGAACGCCTTCCGGCTCTGGCGGAGCTGGCGCCGGAGCTGACATGGCATATCGCCACCCTCT
CGAAATGCTCCACGCCGGCGCTGCGCATCGCTTATGTCCTTGCGCCCAATGCCGCGGCCGCCGTCCGGCTGGCGACGGTC
CTGCGGTCGAGCGTGCTGATGGCGCCGCCGATCTTCGCGGCCCTCGCCACCCGCTGGATCACGGACGGCACGCTGACGGC
TCTTGCCTCTGCGATCCGCGCCGAAAACCGCCAGCGCCAGAGCTCCGCCGCGTCGATCTTCTCGGGGCTCGATTTTGCCG
CCGATCCTGACGGGCACCACCTCTGGCTGCACCTGCCCCAGCGCTGGCGCGCCGCCGAATTTGCCGACCACGCCGAGCGG
GCGGGCCTCGCCATCGTCCCGGCCTCGGCCTTCGCCGTCTCCCCTCACCCGGCCGAGGCCGTTCGGATCTCTCTCGGCAT
CGCCCCGGACCGCGGGATGCTCGAGGAAGGGCTTACGCAGCTCTCGGGTCTTCTCACCCAGCCGGCGGTCGGGTCCCGGG
CCGTCGTCTGA

Upstream 100 bases:

>100_bases
CTGCCCGTCCGCCCCGTGCGGCGCTGCGGCATCCCGGCACCGGATTGCCCGACATCCGGCTTAGGGCGTAGGGTCGATCA
CCCGACAACAGGAGGCGCAC

Downstream 100 bases:

>100_bases
CCTCTCTCGCGGAGGGTTCCGCACCCCGGCCGAACGGCGCAGTTGCGGGGCCGGTCGCCACCGGGAGGCGAGGACGGCCG
AGCGCGGCACGAAACTGGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MWRPHLVDTARLKYLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEAQRRGLVSAQVGRGTFVRDEP
AGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSPRGTLAMHYQESTGAPADRTAAASWLAGRVAGASADRIVVT
SGAQAALFALCALLLGRGDVVAAGAVTYPGLKAVAAQQHLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTT
ATLPADRRREVAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCSTPALRIAYVLAPNAAAAVRLATV
LRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQSSAASIFSGLDFAADPDGHHLWLHLPQRWRAAEFADHAER
AGLAIVPASAFAVSPHPAEAVRISLGIAPDRGMLEEGLTQLSGLLTQPAVGSRAVV

Sequences:

>Translated_456_residues
MWRPHLVDTARLKYLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEAQRRGLVSAQVGRGTFVRDEP
AGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSPRGTLAMHYQESTGAPADRTAAASWLAGRVAGASADRIVVT
SGAQAALFALCALLLGRGDVVAAGAVTYPGLKAVAAQQHLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTT
ATLPADRRREVAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCSTPALRIAYVLAPNAAAAVRLATV
LRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQSSAASIFSGLDFAADPDGHHLWLHLPQRWRAAEFADHAER
AGLAIVPASAFAVSPHPAEAVRISLGIAPDRGMLEEGLTQLSGLLTQPAVGSRAVV
>Mature_456_residues
MWRPHLVDTARLKYLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEAQRRGLVSAQVGRGTFVRDEP
AGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSPRGTLAMHYQESTGAPADRTAAASWLAGRVAGASADRIVVT
SGAQAALFALCALLLGRGDVVAAGAVTYPGLKAVAAQQHLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTT
ATLPADRRREVAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCSTPALRIAYVLAPNAAAAVRLATV
LRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQSSAASIFSGLDFAADPDGHHLWLHLPQRWRAAEFADHAER
AGLAIVPASAFAVSPHPAEAVRISLGIAPDRGMLEEGLTQLSGLLTQPAVGSRAVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

Organism=Homo sapiens, GI7705897, Length=302, Percent_Identity=24.8344370860927, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI33469970, Length=302, Percent_Identity=24.8344370860927, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=27.5641025641026, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1790797, Length=480, Percent_Identity=23.125, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6321236, Length=365, Percent_Identity=22.7397260273973, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y3073_RHOS4 (Q01856)

Other databases:

- EMBL:   M94725
- EMBL:   CP000144
- PIR:   B45728
- RefSeq:   YP_354542.1
- ProteinModelPortal:   Q01856
- SMR:   Q01856
- GeneID:   3721611
- GenomeReviews:   CP000144_GR
- KEGG:   rsp:RSP_3026
- NMPDR:   fig|272943.3.peg.3641
- eggNOG:   COG1167
- HOGENOM:   HBG661358
- OMA:   RINLACA
- ProtClustDB:   CLSK717552
- BioCyc:   RSPH272943:RSP_3026-MONOMER
- GO:   GO:0005622
- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.640.10
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00345

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR; SSF53383 PyrdxlP-dep_Trfase_major

EC number: NA

Molecular weight: Translated: 48174; Mature: 48174

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRPHLVDTARLKYLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
QRRGLVSAQVGRGTFVRDEPAGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSP
HHCCCCEEECCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
RGTLAMHYQESTGAPADRTAAASWLAGRVAGASADRIVVTSGAQAALFALCALLLGRGDV
CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCE
VAAGAVTYPGLKAVAAQQHLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTT
EEECCCCCCCHHHHHHHHHCEECCEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCE
ATLPADRRREVAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCSTPA
ECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCC
LRIAYVLAPNAAAAVRLATVLRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQ
EEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SSAASIFSGLDFAADPDGHHLWLHLPQRWRAAEFADHAERAGLAIVPASAFAVSPHPAEA
HHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCEEECCCCCCE
VRISLGIAPDRGMLEEGLTQLSGLLTQPAVGSRAVV
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MWRPHLVDTARLKYLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
QRRGLVSAQVGRGTFVRDEPAGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSP
HHCCCCEEECCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
RGTLAMHYQESTGAPADRTAAASWLAGRVAGASADRIVVTSGAQAALFALCALLLGRGDV
CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCE
VAAGAVTYPGLKAVAAQQHLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTT
EEECCCCCCCHHHHHHHHHCEECCEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCE
ATLPADRRREVAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCSTPA
ECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCC
LRIAYVLAPNAAAAVRLATVLRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQ
EEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SSAASIFSGLDFAADPDGHHLWLHLPQRWRAAEFADHAERAGLAIVPASAFAVSPHPAEA
HHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCEEECCCCCCE
VRISLGIAPDRGMLEEGLTQLSGLLTQPAVGSRAVV
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197