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The map label for this gene is exbD [H]

Identifier: 77461777

GI number: 77461777

Start: 6223835

End: 6224263

Strand: Direct

Name: exbD [H]

Synonym: Pfl01_5556

Alternate gene names: 77461777

Gene position: 6223835-6224263 (Clockwise)

Preceding gene: 77461776

Following gene: 77461778

Centisome position: 96.67

GC content: 60.61

Gene sequence:

>429_bases
ATGGGCCTGCATTTGAAAGAAGGCGCAGACGACGATCTGGCCGAGAACCACGAAATCAACGTCACGCCGTTCATCGACGT
GATGCTGGTGCTGTTGATCATCTTCATGGTGGCCGCGCCGCTGGCCACCGTGGACATCAAGGTTGACCTGCCTGCCTCGA
CCGCCAAACCGGCGCCGCGGCCAGAGAAACCGGTGTTCCTCAGCGTGAAGGCTGACCAGCGCCTGTTCCTGGGCGATGAC
GAAGTGAAAGCCGAAACCCTCGGCGCCGCACTCGACGCCAAGACCCAGGGCAAGAAAGACACGACGATCTTCTTCCAGGC
CGACAAAGGCGTGGATTACGGCGACCTGATGAGCGTGATGGATAACCTGCGCGCCGCCGGTTACCTGAAGGTCGGCCTGG
TCGGACTCGAGAGCGCAGTCAAGAAATGA

Upstream 100 bases:

>100_bases
TGCGTCGGCTCAGGTGCTGCTGCTGGTCAGCCGCGACCTCGACCACCAGCCTGAGCGCAACAGCTCGCAACCGCACATGG
TGAAAGTGGGGTAATCGGCC

Downstream 100 bases:

>100_bases
TCACGACGCGCCATAAGCTGACGCGTTACAGCGGTAGCCTGGCCGTGGTGCTGGGTGTTCACGCGCTGGCCATCGCGCTG
GCGCTGAACTGGACCGCCCG

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MGLHLKEGADDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPRPEKPVFLSVKADQRLFLGDD
EVKAETLGAALDAKTQGKKDTTIFFQADKGVDYGDLMSVMDNLRAAGYLKVGLVGLESAVKK

Sequences:

>Translated_142_residues
MGLHLKEGADDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPRPEKPVFLSVKADQRLFLGDD
EVKAETLGAALDAKTQGKKDTTIFFQADKGVDYGDLMSVMDNLRAAGYLKVGLVGLESAVKK
>Mature_141_residues
GLHLKEGADDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPRPEKPVFLSVKADQRLFLGDDE
VKAETLGAALDAKTQGKKDTTIFFQADKGVDYGDLMSVMDNLRAAGYLKVGLVGLESAVKK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=142, Percent_Identity=69.7183098591549, Blast_Score=198, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15268; Mature: 15137

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLHLKEGADDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PEKPVFLSVKADQRLFLGDDEVKAETLGAALDAKTQGKKDTTIFFQADKGVDYGDLMSVM
CCCCEEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHH
DNLRAAGYLKVGLVGLESAVKK
HHHHHCCCCEEHHHHHHHHHCC
>Mature Secondary Structure 
GLHLKEGADDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PEKPVFLSVKADQRLFLGDDEVKAETLGAALDAKTQGKKDTTIFFQADKGVDYGDLMSVM
CCCCEEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHH
DNLRAAGYLKVGLVGLESAVKK
HHHHHCCCCEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]