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The map label for this gene is yecS [H]

Identifier: 77461682

GI number: 77461682

Start: 6127604

End: 6128254

Strand: Direct

Name: yecS [H]

Synonym: Pfl01_5461

Alternate gene names: 77461682

Gene position: 6127604-6128254 (Clockwise)

Preceding gene: 77461681

Following gene: 77461683

Centisome position: 95.17

GC content: 62.52

Gene sequence:

>651_bases
ATGAGCGACTTCACGTTCTGGGACATCCTGCGCAACCTGCTCACCGGCCTGCAATGGACGCTGGCGCTGTCGCTGGTGGC
ATTCATCGGCGGCGGGATCGTCGGGTTGCTGATCCTGATCATGCGCATCTCGAAAAACCCGCTGCCCAGCAGCATCGCCC
GCACCTGGATCGAACTGTTTCAGGGCACACCGCTGTTGATGCAGCTGTTTCTGGTGTTTTTCGGCGTGGCGCTGGCCGGG
GTGGAGATTTCGCCGTGGATGGCGGCGGCGATTGCCCTGACGCTGTTCACCAGTGCTTATCTGGCGGAGATCTGGCGCGG
CTGCGTCGAGGCGATTCCCCACGGTCAGTGGGAAGCTTCGTCGAGCCTGGCGCTGAATCCGCTGGAGCAACTGCGCTACG
TGATCCTGCCGCAGGCGCTGCGCATCGCCGTAGCGCCAACCGTGGGTTTTTCGGTGCAAGTGGTCAAGGGAACCGCGGTG
ACCTCGATCATCGGCTTCACCGAACTGACCAAGACCGGCGGCATGCTCGCCAACGCCACTTTCGAACCGTTCATGGTCTA
CGGCCTCGTCGCCCTGGGCTACTTCCTGCTCTGCTACCCCCTGTCCCTCAGTGCGCGCTACCTGGAAAGGAGACTGCATG
CCTCTGCTTAG

Upstream 100 bases:

>100_bases
TGACCACCCTCATTTATCTGTGCATGGCGCTGCTGATCCGGCAGTTGCTGAACTGGCTCGGTCGGCGCTACCTCTCGAAA
AGCAGCGCAAGGAGCAGCCA

Downstream 100 bases:

>100_bases
AATTTCCGCCCTGCATAAATATTACGGCGATCACCACGTGCTCAAAGGCATCGACCTGAGCGTCGAGGAAGGCCAAGTGG
TGGCGATCATCGGCCGCAGC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSDFTFWDILRNLLTGLQWTLALSLVAFIGGGIVGLLILIMRISKNPLPSSIARTWIELFQGTPLLMQLFLVFFGVALAG
VEISPWMAAAIALTLFTSAYLAEIWRGCVEAIPHGQWEASSSLALNPLEQLRYVILPQALRIAVAPTVGFSVQVVKGTAV
TSIIGFTELTKTGGMLANATFEPFMVYGLVALGYFLLCYPLSLSARYLERRLHASA

Sequences:

>Translated_216_residues
MSDFTFWDILRNLLTGLQWTLALSLVAFIGGGIVGLLILIMRISKNPLPSSIARTWIELFQGTPLLMQLFLVFFGVALAG
VEISPWMAAAIALTLFTSAYLAEIWRGCVEAIPHGQWEASSSLALNPLEQLRYVILPQALRIAVAPTVGFSVQVVKGTAV
TSIIGFTELTKTGGMLANATFEPFMVYGLVALGYFLLCYPLSLSARYLERRLHASA
>Mature_215_residues
SDFTFWDILRNLLTGLQWTLALSLVAFIGGGIVGLLILIMRISKNPLPSSIARTWIELFQGTPLLMQLFLVFFGVALAGV
EISPWMAAAIALTLFTSAYLAEIWRGCVEAIPHGQWEASSSLALNPLEQLRYVILPQALRIAVAPTVGFSVQVVKGTAVT
SIIGFTELTKTGGMLANATFEPFMVYGLVALGYFLLCYPLSLSARYLERRLHASA

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=34.9514563106796, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1787030, Length=209, Percent_Identity=33.0143540669856, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=30.6976744186047, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=32.8502415458937, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=30.2884615384615, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1786874, Length=212, Percent_Identity=28.3018867924528, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=28.5046728971963, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI48994930, Length=178, Percent_Identity=33.1460674157303, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787087, Length=136, Percent_Identity=30.8823529411765, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23571; Mature: 23440

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFTFWDILRNLLTGLQWTLALSLVAFIGGGIVGLLILIMRISKNPLPSSIARTWIELF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QGTPLLMQLFLVFFGVALAGVEISPWMAAAIALTLFTSAYLAEIWRGCVEAIPHGQWEAS
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SSLALNPLEQLRYVILPQALRIAVAPTVGFSVQVVKGTAVTSIIGFTELTKTGGMLANAT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEECCC
FEPFMVYGLVALGYFLLCYPLSLSARYLERRLHASA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDFTFWDILRNLLTGLQWTLALSLVAFIGGGIVGLLILIMRISKNPLPSSIARTWIELF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QGTPLLMQLFLVFFGVALAGVEISPWMAAAIALTLFTSAYLAEIWRGCVEAIPHGQWEAS
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SSLALNPLEQLRYVILPQALRIAVAPTVGFSVQVVKGTAVTSIIGFTELTKTGGMLANAT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEECCC
FEPFMVYGLVALGYFLLCYPLSLSARYLERRLHASA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]