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The map label for this gene is yecS [H]

Identifier: 77461681

GI number: 77461681

Start: 6126927

End: 6127607

Strand: Direct

Name: yecS [H]

Synonym: Pfl01_5460

Alternate gene names: 77461681

Gene position: 6126927-6127607 (Clockwise)

Preceding gene: 77461680

Following gene: 77461682

Centisome position: 95.16

GC content: 61.38

Gene sequence:

>681_bases
ATGGCCTATCAGTTCGATTTCTTGCCGGTGGTGGAAAACACCGACCTGCTGCTGCGCGGGGCGTTGTTCACCCTTGAGCT
AACGGCCATCGGCGCGCTGTTCGGGGTTGGCGTGGGCATCGTCGGAGCGCTGGTGCGGGCGTGGAACATCCGCCCGTTCT
CGACGATCTTCGGCGTTTATGTGGAGTTGATCCGCAACACGCCGTTTCTGGTGCAGTTGTTCTTCATCTTCTTCGGTCTG
CCGTCCCTCGGCGTGCAGATTTCCGAGTGGCAAGCGGCGGTGCTGGCGATGGTGATCAACCTCGGCGCGTATTCGACCGA
GATCATCCGCGCCGGCATCCAGGCGATTCCGCGCGGGCAGCTGGAAGCTGCGGCGGCATTGGCGATGAGCCGTTTCGAAG
CGTTCCGCCACGTGGTGCTGCTGCCGGCACTGGGCAAAGTGTGGCCGGCGCTGAGTAGCCAGATCATCATCGTCATGCTC
GGTTCGGCGGTGTGTTCGCAGATCGCCACCGAGGAGTTGAGCTTCGCTGCCAACTTCATTCAGTCGCGCAACTTCCGCGC
CTTTGAAACCTACGCCCTGACCACCCTCATTTATCTGTGCATGGCGCTGCTGATCCGGCAGTTGCTGAACTGGCTCGGTC
GGCGCTACCTCTCGAAAAGCAGCGCAAGGAGCAGCCAATGA

Upstream 100 bases:

>100_bases
GACCACCGCCAAGGCTGACGGCGCACTGGAAAAAAATGCGCAGACCTGGCTCAAAGAGCCGCTGCCGGCCGATCTCTGAT
CGGCGCCGCGGGAGACTTTC

Downstream 100 bases:

>100_bases
GCGACTTCACGTTCTGGGACATCCTGCGCAACCTGCTCACCGGCCTGCAATGGACGCTGGCGCTGTCGCTGGTGGCATTC
ATCGGCGGCGGGATCGTCGG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MAYQFDFLPVVENTDLLLRGALFTLELTAIGALFGVGVGIVGALVRAWNIRPFSTIFGVYVELIRNTPFLVQLFFIFFGL
PSLGVQISEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQLEAAAALAMSRFEAFRHVVLLPALGKVWPALSSQIIIVML
GSAVCSQIATEELSFAANFIQSRNFRAFETYALTTLIYLCMALLIRQLLNWLGRRYLSKSSARSSQ

Sequences:

>Translated_226_residues
MAYQFDFLPVVENTDLLLRGALFTLELTAIGALFGVGVGIVGALVRAWNIRPFSTIFGVYVELIRNTPFLVQLFFIFFGL
PSLGVQISEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQLEAAAALAMSRFEAFRHVVLLPALGKVWPALSSQIIIVML
GSAVCSQIATEELSFAANFIQSRNFRAFETYALTTLIYLCMALLIRQLLNWLGRRYLSKSSARSSQ
>Mature_225_residues
AYQFDFLPVVENTDLLLRGALFTLELTAIGALFGVGVGIVGALVRAWNIRPFSTIFGVYVELIRNTPFLVQLFFIFFGLP
SLGVQISEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQLEAAAALAMSRFEAFRHVVLLPALGKVWPALSSQIIIVMLG
SAVCSQIATEELSFAANFIQSRNFRAFETYALTTLIYLCMALLIRQLLNWLGRRYLSKSSARSSQ

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=201, Percent_Identity=33.8308457711443, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=34.1121495327103, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=28.0373831775701, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786873, Length=221, Percent_Identity=27.6018099547511, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788645, Length=178, Percent_Identity=26.4044943820225, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786874, Length=199, Percent_Identity=27.6381909547739, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787086, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24916; Mature: 24785

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQFDFLPVVENTDLLLRGALFTLELTAIGALFGVGVGIVGALVRAWNIRPFSTIFGVY
CCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VELIRNTPFLVQLFFIFFGLPSLGVQISEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQ
HHHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
LEAAAALAMSRFEAFRHVVLLPALGKVWPALSSQIIIVMLGSAVCSQIATEELSFAANFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QSRNFRAFETYALTTLIYLCMALLIRQLLNWLGRRYLSKSSARSSQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AYQFDFLPVVENTDLLLRGALFTLELTAIGALFGVGVGIVGALVRAWNIRPFSTIFGVY
CEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VELIRNTPFLVQLFFIFFGLPSLGVQISEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQ
HHHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
LEAAAALAMSRFEAFRHVVLLPALGKVWPALSSQIIIVMLGSAVCSQIATEELSFAANFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QSRNFRAFETYALTTLIYLCMALLIRQLLNWLGRRYLSKSSARSSQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]