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The map label for this gene is oprD [H]

Identifier: 77461638

GI number: 77461638

Start: 6081120

End: 6082463

Strand: Reverse

Name: oprD [H]

Synonym: Pfl01_5417

Alternate gene names: 77461638

Gene position: 6082463-6081120 (Counterclockwise)

Preceding gene: 77461640

Following gene: 77461637

Centisome position: 94.47

GC content: 58.78

Gene sequence:

>1344_bases
ATGAACAAGTCCACCTTGGCCCTGGCCGTGGCCGTAGGGGTTTTGGCGCAGCAGGCAGGCGCCGCCGGTTTCATCGAAGA
CAGCAAGGCCACCTTGGGGCTGCGTAACTTCTACATCAACACCGACAACCGCGATGGCGCTGGCGCCAACAAGAACGAAG
AGTGGGGCCAAGGCTTCGATCTGCGTTTCATCTCCGGTTACACCCAAGGCACTGTGGGCTTCGGTATCGACGCCATCGGC
TTGCTGGGCGTGCGTCTGGATTCGGGCGGCGGCACCAACGGCAACAGCGGCACCGCTTACGGCGGCACTGTGTTCCCGAG
CGAGTCCAACGGCAAAGCAGTGGACAACTTCTCCAGCCTGGGTCTGACTGCCAAAGCCAAGATCTCCCAGACCGAACTGA
AGCTGGGCACCCTGCAGCCGAAGAACCCGGTCATCGTGACCAACGACGGCCGCCTGCTGCCACAAACCTGGCAGGGTGGT
CAGATCACCTCCGGCGAAATCAAGGACCTGACTCTGGTCGGTGGTCAGATCGAAGCCGTGAAAGGCCGTAACTCCAGCAA
CAACGAAAACCTGTCCATCAGCGGCGCAAACAGCCGTGGCACTGGCTTCCGTGACAGCAACAAGTTCATCTACGCCGGTG
GTGACTACAAGATCACCAAAGACCTGACTGCCCAGTACTACTACGGCAACCTGGAAGACTTCTACAAGCAGCACTTCCTG
GGTCTGGTACACAACTGGGCCATCGGCCCGGGCGTATTGAAGTCTGACTTCCGTTACTTCAACAGCTCCGACGACGGCAA
GAACGGCACTGATCCTGCGTACTTCAGCACCGGTAACTACACCGGCGTGCGTAACGGTCGTGGCGAAGTCGACAACAACC
TGTACAGCGGCCTGTTCCTGTACACCGTTGAAGGTCACACCTTCGGTGGCGGTTACCAGGTTTCCAACGGCAGCTCTGAC
TTCCCTTGGCTGAACCAGGGCGACGGTTCGTCGAACTACACCATCACCGACATGCAGATCCAGAAGTTCGGCCGTGCCGG
CGAGAAAACCTGGCAGGCTCGCTACTCGTATGACTTCGCTAAAGTCGGCGTACCTGGCCTGACCGCTGGTGTGGTTTACC
TGAAAGGCGATTCGATCGACACCGTTGGTACCAACGGTCGCGAAAGCGCTTCGAACCGTTCCGAGTGGGAACGCGACTTC
ACCATCGGTTACGTCGTACCGGAAGGTCCTTTCAAGAACGTCGGCCTGATGTGGAAAAACGCTGTATGGCGCACCGACCT
GCCGAACACCCGTTCGCAGGACGAAAACCGCCTGATCGTCAGCTACTCGATCCCGCTGTTGTAA

Upstream 100 bases:

>100_bases
ACTTGTCAGTCACGGTCTGGCGCTAATCGCGCATCTTAGGATCCAGGGGCATCAGACCCCGGACCAGGAACACAAGAATT
AGAAACGAGAGGAGCGAAAC

Downstream 100 bases:

>100_bases
TAGCGCGCTCCTGCACTGATGTAAAAAGCCTGATGTAAAAAAAGCCCCGTCCGGCATCGCGCCGGACGGGGCTTTTGTGT
TTCCGGGTCCGGCTCACCCC

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MNKSTLALAVAVGVLAQQAGAAGFIEDSKATLGLRNFYINTDNRDGAGANKNEEWGQGFDLRFISGYTQGTVGFGIDAIG
LLGVRLDSGGGTNGNSGTAYGGTVFPSESNGKAVDNFSSLGLTAKAKISQTELKLGTLQPKNPVIVTNDGRLLPQTWQGG
QITSGEIKDLTLVGGQIEAVKGRNSSNNENLSISGANSRGTGFRDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFL
GLVHNWAIGPGVLKSDFRYFNSSDDGKNGTDPAYFSTGNYTGVRNGRGEVDNNLYSGLFLYTVEGHTFGGGYQVSNGSSD
FPWLNQGDGSSNYTITDMQIQKFGRAGEKTWQARYSYDFAKVGVPGLTAGVVYLKGDSIDTVGTNGRESASNRSEWERDF
TIGYVVPEGPFKNVGLMWKNAVWRTDLPNTRSQDENRLIVSYSIPLL

Sequences:

>Translated_447_residues
MNKSTLALAVAVGVLAQQAGAAGFIEDSKATLGLRNFYINTDNRDGAGANKNEEWGQGFDLRFISGYTQGTVGFGIDAIG
LLGVRLDSGGGTNGNSGTAYGGTVFPSESNGKAVDNFSSLGLTAKAKISQTELKLGTLQPKNPVIVTNDGRLLPQTWQGG
QITSGEIKDLTLVGGQIEAVKGRNSSNNENLSISGANSRGTGFRDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFL
GLVHNWAIGPGVLKSDFRYFNSSDDGKNGTDPAYFSTGNYTGVRNGRGEVDNNLYSGLFLYTVEGHTFGGGYQVSNGSSD
FPWLNQGDGSSNYTITDMQIQKFGRAGEKTWQARYSYDFAKVGVPGLTAGVVYLKGDSIDTVGTNGRESASNRSEWERDF
TIGYVVPEGPFKNVGLMWKNAVWRTDLPNTRSQDENRLIVSYSIPLL
>Mature_447_residues
MNKSTLALAVAVGVLAQQAGAAGFIEDSKATLGLRNFYINTDNRDGAGANKNEEWGQGFDLRFISGYTQGTVGFGIDAIG
LLGVRLDSGGGTNGNSGTAYGGTVFPSESNGKAVDNFSSLGLTAKAKISQTELKLGTLQPKNPVIVTNDGRLLPQTWQGG
QITSGEIKDLTLVGGQIEAVKGRNSSNNENLSISGANSRGTGFRDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFL
GLVHNWAIGPGVLKSDFRYFNSSDDGKNGTDPAYFSTGNYTGVRNGRGEVDNNLYSGLFLYTVEGHTFGGGYQVSNGSSD
FPWLNQGDGSSNYTITDMQIQKFGRAGEKTWQARYSYDFAKVGVPGLTAGVVYLKGDSIDTVGTNGRESASNRSEWERDF
TIGYVVPEGPFKNVGLMWKNAVWRTDLPNTRSQDENRLIVSYSIPLL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 48197; Mature: 48197

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSTLALAVAVGVLAQQAGAAGFIEDSKATLGLRNFYINTDNRDGAGANKNEEWGQGFD
CCCHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCC
LRFISGYTQGTVGFGIDAIGLLGVRLDSGGGTNGNSGTAYGGTVFPSESNGKAVDNFSSL
EEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHC
GLTAKAKISQTELKLGTLQPKNPVIVTNDGRLLPQTWQGGQITSGEIKDLTLVGGQIEAV
CEEEEEECCEEEEEEECCCCCCCEEEECCCEECCCCCCCCEECCCCCEEEEEECCEEEEE
KGRNSSNNENLSISGANSRGTGFRDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFL
ECCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCCEEEEEECCHHHHHHHHHH
GLVHNWAIGPGVLKSDFRYFNSSDDGKNGTDPAYFSTGNYTGVRNGRGEVDNNLYSGLFL
HHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCEEE
YTVEGHTFGGGYQVSNGSSDFPWLNQGDGSSNYTITDMQIQKFGRAGEKTWQARYSYDFA
EEECCEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCEEEEEECCCHH
KVGVPGLTAGVVYLKGDSIDTVGTNGRESASNRSEWERDFTIGYVVPEGPFKNVGLMWKN
HCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCEEEEC
AVWRTDLPNTRSQDENRLIVSYSIPLL
CEEECCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MNKSTLALAVAVGVLAQQAGAAGFIEDSKATLGLRNFYINTDNRDGAGANKNEEWGQGFD
CCCHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCC
LRFISGYTQGTVGFGIDAIGLLGVRLDSGGGTNGNSGTAYGGTVFPSESNGKAVDNFSSL
EEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHC
GLTAKAKISQTELKLGTLQPKNPVIVTNDGRLLPQTWQGGQITSGEIKDLTLVGGQIEAV
CEEEEEECCEEEEEEECCCCCCCEEEECCCEECCCCCCCCEECCCCCEEEEEECCEEEEE
KGRNSSNNENLSISGANSRGTGFRDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFL
ECCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCCEEEEEECCHHHHHHHHHH
GLVHNWAIGPGVLKSDFRYFNSSDDGKNGTDPAYFSTGNYTGVRNGRGEVDNNLYSGLFL
HHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCEEE
YTVEGHTFGGGYQVSNGSSDFPWLNQGDGSSNYTITDMQIQKFGRAGEKTWQARYSYDFA
EEECCEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCEEEEEECCCHH
KVGVPGLTAGVVYLKGDSIDTVGTNGRESASNRSEWERDFTIGYVVPEGPFKNVGLMWKN
HCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCEEEEC
AVWRTDLPNTRSQDENRLIVSYSIPLL
CEEECCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]