| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77461596
Identifier: 77461596
GI number: 77461596
Start: 6037617
End: 6038399
Strand: Reverse
Name: 77461596
Synonym: Pfl01_5375
Alternate gene names: NA
Gene position: 6038399-6037617 (Counterclockwise)
Preceding gene: 77461598
Following gene: 77461595
Centisome position: 93.79
GC content: 63.86
Gene sequence:
>783_bases ATGGAATTTCTGCTCTATCTGGCGCTGGGCGCCTGTGCGGGCGTACTGGCCGGGCTGTTCGGGGTGGGCGGCGGGATCAT CATCGTCCCGGTGCTGGTGTTCAGTTTCACCTTGCAGGGCTTCGATCCGTCGATCCTGACCCATCTGGCGGTCGGCACGT CCCTGGCGACGATCATCTTCACGTCGGTCAACGCGGTGCGCGAGCATCACCGACGCGGCGCGGTGCGCTGGCCAATCTTC CGCTGGATGACCGTGGGCATTCTGCTCGGCGCCGGTTTCGGTGCATTGACCGCCGAAGCGATCTCCGGACCCAACCTGCA AAAGATCATCGGTGTGTTCGCCCTGGTGATCGCGGCGCAGCTGGCGCTGGACGTCAAACCCAAGGCCAGCCGAACGGTGC CGGGTAAACTCGGTCTGACCGTGGCCGGCAGTGTGATCGGCTGGGCGTCGGCGATTTTCGGGATTGGCGGCGGCTCGCTG ACCGTGCCGTTCCTGACCTGGCGCAGCGTGCCGATGCAACAGGCGGTGGCGACCTCGTCGGCCTGTGGCCTGCCGATTGC CGTCGCCAGTGCCATAAGTTTCATGATTCTGGGCTGGCATGATCCGTTGCTGCCGGCCCATAGTCTCGGTTTTGTGTATT TGCCGGCGCTTTTGGGCATTGCCCTGACCAGCATGGTGTTCGCCCGTCTCGGCGCGCGGCTGGCGCACAGGTTGTCGCCG AAGTTGCTGAAACGGCTGTTCGCGGCTTTGCTGTTTTGCGTGGGCCTGAGCTTTCTGTTCTGA
Upstream 100 bases:
>100_bases TACGCAGACATCGTCCGTGCATCCATCGCCAGTGGAGCCGAAGGGTATCCATCCGTTACCATGCCGCTCCGGTTTTGGGG ACGCGCCTTGGGAGGCAGTC
Downstream 100 bases:
>100_bases GCCGTCTGTTTTGGCAGGTCGCAATCCTGGCTTAATCCTGAGGTGACAGCGTCGCCCGGGAATTTTTGAAGATTTGAATG CTAACGAGGAGTCGCAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MEFLLYLALGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPSILTHLAVGTSLATIIFTSVNAVREHHRRGAVRWPIF RWMTVGILLGAGFGALTAEAISGPNLQKIIGVFALVIAAQLALDVKPKASRTVPGKLGLTVAGSVIGWASAIFGIGGGSL TVPFLTWRSVPMQQAVATSSACGLPIAVASAISFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARLGARLAHRLSP KLLKRLFAALLFCVGLSFLF
Sequences:
>Translated_260_residues MEFLLYLALGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPSILTHLAVGTSLATIIFTSVNAVREHHRRGAVRWPIF RWMTVGILLGAGFGALTAEAISGPNLQKIIGVFALVIAAQLALDVKPKASRTVPGKLGLTVAGSVIGWASAIFGIGGGSL TVPFLTWRSVPMQQAVATSSACGLPIAVASAISFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARLGARLAHRLSP KLLKRLFAALLFCVGLSFLF >Mature_260_residues MEFLLYLALGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPSILTHLAVGTSLATIIFTSVNAVREHHRRGAVRWPIF RWMTVGILLGAGFGALTAEAISGPNLQKIIGVFALVIAAQLALDVKPKASRTVPGKLGLTVAGSVIGWASAIFGIGGGSL TVPFLTWRSVPMQQAVATSSACGLPIAVASAISFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARLGARLAHRLSP KLLKRLFAALLFCVGLSFLF
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 27144; Mature: 27144
Theoretical pI: Translated: 11.28; Mature: 11.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFLLYLALGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPSILTHLAVGTSLATIIF CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH TSVNAVREHHRRGAVRWPIFRWMTVGILLGAGFGALTAEAISGPNLQKIIGVFALVIAAQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH LALDVKPKASRTVPGKLGLTVAGSVIGWASAIFGIGGGSLTVPFLTWRSVPMQQAVATSS HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCHHHHHHHCC ACGLPIAVASAISFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARLGARLAHRLSP CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH KLLKRLFAALLFCVGLSFLF HHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MEFLLYLALGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPSILTHLAVGTSLATIIF CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH TSVNAVREHHRRGAVRWPIFRWMTVGILLGAGFGALTAEAISGPNLQKIIGVFALVIAAQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH LALDVKPKASRTVPGKLGLTVAGSVIGWASAIFGIGGGSLTVPFLTWRSVPMQQAVATSS HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCHHHHHHHCC ACGLPIAVASAISFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARLGARLAHRLSP CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH KLLKRLFAALLFCVGLSFLF HHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]