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The map label for this gene is rarD [C]

Identifier: 77461402

GI number: 77461402

Start: 5827109

End: 5827996

Strand: Direct

Name: rarD [C]

Synonym: Pfl01_5181

Alternate gene names: 77461402

Gene position: 5827109-5827996 (Clockwise)

Preceding gene: 77461401

Following gene: 77461404

Centisome position: 90.51

GC content: 63.96

Gene sequence:

>888_bases
ATGCAAGCCGCCAACCCGCGTCGCGGGTACATTCTGGGCCTCAGCGCCTACATCATCTGGGGACTGTTCCCGCTCTACTT
CAAAGCCATCGCCGAAGTGCCGGCGGTGGAAATCATCATTCATCGAGTGCTGTGGTCGGCGCTGTTCGGCGCGCTGCTGT
TGATGGTGTGGAAGCATCCCGGCTGGTGGCAGGAACTGCGCGACAACCCGAAACGCCTGGCGATTCTTGCGCTCAGCGGC
ACCTTGATCGCGGCCAACTGGCTGACCTACGTGTGGTCGGTGAACAACGGCCGGATGCTGGAAGCGAGCCTCGGTTATTA
CATCAACCCGCTGGTGAACGTGCTACTGGGCATGCTGATCCTTGGCGAACGCTTGCGCCGCATGCAGTGGCTGGCGGTCG
GTCTGGCGGCTATCGGTGTGGCGCAGCAGGTGTGGCAGGTCGGCAGCCTGCCGTGGGTATCGCTGGTGCTGGCGCTGACC
TTCGGTTTCTACGGGCTGATCCGCAAGCAGGCGCCGATCAAGGCGTTGCCGGGGCTGGTGGTGGAAACCTGGATGCTGGT
GCCGATCGCCCTCGCGTGGCTGCTGTTCAATCCGACCGCCACCAGCGCTCAGGCCGAGTTCTGGACCACCTCCGAAGCCT
GGTGGCTGGTGGCAGCCGGTCCGGTGACGCTGGTGCCGCTGGTGTGCTTCAACGCGGCCGCGCGGCATCTGCCTTACACC
ACCCTCGGCTTCCTGCAATACCTGGCGCCGACGCTGGTGCTGCTGCAAGCCGTGCTGCTGTTCGGCGAGCACTTGTCGTC
CAGCACACTGATCGCCTTCATGTTTATCTGGGCCGGTCTGGCGGTGTACAGCGTCGATGCTTGGATGAGTCTGCGTCGGC
GCAGCTGA

Upstream 100 bases:

>100_bases
GGCGCTGAACGAAGAGCCGTTGAAGCTTTTCTGACACGACACGTCTATACAACTGCCCGTACAATCGCTGCTTTGTTAGC
TGCCTAAGCAAGGATTCTGC

Downstream 100 bases:

>100_bases
TCAAAAAACGCACAAACCTTCACAGGCCACGGTTCTCGTGGCCTGTATCGTTCCTTCCCAAGGTTATCCACAGCGTGATC
CCCGCCGTTTGTGCGCAAGT

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQAANPRRGYILGLSAYIIWGLFPLYFKAIAEVPAVEIIIHRVLWSALFGALLLMVWKHPGWWQELRDNPKRLAILALSG
TLIAANWLTYVWSVNNGRMLEASLGYYINPLVNVLLGMLILGERLRRMQWLAVGLAAIGVAQQVWQVGSLPWVSLVLALT
FGFYGLIRKQAPIKALPGLVVETWMLVPIALAWLLFNPTATSAQAEFWTTSEAWWLVAAGPVTLVPLVCFNAAARHLPYT
TLGFLQYLAPTLVLLQAVLLFGEHLSSSTLIAFMFIWAGLAVYSVDAWMSLRRRS

Sequences:

>Translated_295_residues
MQAANPRRGYILGLSAYIIWGLFPLYFKAIAEVPAVEIIIHRVLWSALFGALLLMVWKHPGWWQELRDNPKRLAILALSG
TLIAANWLTYVWSVNNGRMLEASLGYYINPLVNVLLGMLILGERLRRMQWLAVGLAAIGVAQQVWQVGSLPWVSLVLALT
FGFYGLIRKQAPIKALPGLVVETWMLVPIALAWLLFNPTATSAQAEFWTTSEAWWLVAAGPVTLVPLVCFNAAARHLPYT
TLGFLQYLAPTLVLLQAVLLFGEHLSSSTLIAFMFIWAGLAVYSVDAWMSLRRRS
>Mature_295_residues
MQAANPRRGYILGLSAYIIWGLFPLYFKAIAEVPAVEIIIHRVLWSALFGALLLMVWKHPGWWQELRDNPKRLAILALSG
TLIAANWLTYVWSVNNGRMLEASLGYYINPLVNVLLGMLILGERLRRMQWLAVGLAAIGVAQQVWQVGSLPWVSLVLALT
FGFYGLIRKQAPIKALPGLVVETWMLVPIALAWLLFNPTATSAQAEFWTTSEAWWLVAAGPVTLVPLVCFNAAARHLPYT
TLGFLQYLAPTLVLLQAVLLFGEHLSSSTLIAFMFIWAGLAVYSVDAWMSLRRRS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=47.4576271186441, Blast_Score=275, Evalue=4e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32946; Mature: 32946

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAANPRRGYILGLSAYIIWGLFPLYFKAIAEVPAVEIIIHRVLWSALFGALLLMVWKHP
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GWWQELRDNPKRLAILALSGTLIAANWLTYVWSVNNGRMLEASLGYYINPLVNVLLGMLI
CHHHHHCCCCHHEEEEEECCHHHHHHHHHHEEECCCCEEEEHHHHHHHHHHHHHHHHHHH
LGERLRRMQWLAVGLAAIGVAQQVWQVGSLPWVSLVLALTFGFYGLIRKQAPIKALPGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCHHH
VETWMLVPIALAWLLFNPTATSAQAEFWTTSEAWWLVAAGPVTLVPLVCFNAAARHLPYT
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHCCHH
TLGFLQYLAPTLVLLQAVLLFGEHLSSSTLIAFMFIWAGLAVYSVDAWMSLRRRS
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQAANPRRGYILGLSAYIIWGLFPLYFKAIAEVPAVEIIIHRVLWSALFGALLLMVWKHP
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GWWQELRDNPKRLAILALSGTLIAANWLTYVWSVNNGRMLEASLGYYINPLVNVLLGMLI
CHHHHHCCCCHHEEEEEECCHHHHHHHHHHEEECCCCEEEEHHHHHHHHHHHHHHHHHHH
LGERLRRMQWLAVGLAAIGVAQQVWQVGSLPWVSLVLALTFGFYGLIRKQAPIKALPGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCHHH
VETWMLVPIALAWLLFNPTATSAQAEFWTTSEAWWLVAAGPVTLVPLVCFNAAARHLPYT
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHCCHH
TLGFLQYLAPTLVLLQAVLLFGEHLSSSTLIAFMFIWAGLAVYSVDAWMSLRRRS
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]