| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is cat [H]
Identifier: 77461274
GI number: 77461274
Start: 5690245
End: 5691699
Strand: Reverse
Name: cat [H]
Synonym: Pfl01_5053
Alternate gene names: 77461274
Gene position: 5691699-5690245 (Counterclockwise)
Preceding gene: 77461275
Following gene: 77461273
Centisome position: 88.4
GC content: 58.69
Gene sequence:
>1455_bases ATGAGCCAGAACAAGACGCTTACGACCGCCAGTGGCGCACCTGTCGCCGATAACCAGAACTCTCGCTCCTCCGGCCCTCG TGGTCCGTTGTTGCTCGATGATTTCCACCTGATCGAGAAGCTTGCTCACTTCAACCGGGAAAACATTCCTGAACGTCGTG TACACGCCAAGGGTTCGGGCGCATACGGCACTTTCACGGTCACTCGCGACATTACGCAGTACACCAGCGCCAAGCTGTTC TCTGCTGTCGGCAAGCAGACGCCGACCTTCCTGCGTTTCTCCACGGTCGGTGGTGAGCGTGGTTCGGCCGATACCGAGCG CGATCCGCGTGGCTTCGCCCTCAAGTTCTACACCGAAGAAGGCAACTGGGACATCGTCGGCAACAACACGCCGGTGTTCT TCATTCGCGATCCGCTGAAATTTCCTGACTTTATCCACACCCAGAAACGCCTGCCGCAAAGCAACCTGAAAAGCGCGCAG ATGATGTGGGACTTCTGGTCGCATTCGCCTGAAGCGCTGCACCAGGTCACGATCCTGTTCTCCGATCGCGGTATACCGGA CGGCTATCGCCACATGCACGGCTTCGGCAGTCACACCTACAGCCTCATCAGCGCTCAAGGCGAGCGCCACTGGGTGAAGT GGCACTACAAGACCAAGCAAGGGATCAAGAACCTCGCGCCGGCAGACGCGGCACGTCTGGCAGGCACAGACCCGGACTAC GCCCAGCGCGATCTGTTCGAAGCCATCGAGCGTGGTGACTTCCCGAAATGGAGCGTATGCATCCAGATCATGACCGAAGC CCAAGCCGCTGCGCACTATGAGAACCCGTTCGACGTGACCAAGACCTGGTCGCAAAAGGAGTTTCCACTGATCGAGGTGG GTGAGTTGGAGCTGAACCGTAATCCGCTCAACTACTTTGCCGAAGTTGAGCAAGCTGCGTTCGGCCCGAGCAACATGGTG CCTGGCGTAGGTCTGTCGCCAGATCGCATGCTGCAAGGTCGAGTATTCGCGTACGCCGATGCCCACCGCTACCGCGTAGG CACCAACCACCAGCAGCTGCCAGTTAACGCCCCGCGCAGCCCGGTGAATACTTACCAGCGCGACGGTTCTATGGCTTTTG GCAGCAATGGTGGCGCGGCGCCTAACTACGAGCCAAACAGCTACGTAGAGTCGCCGAAACAAGCGCCACATTATGCCGAG CCTGCGCTGGCCCTGAGTGGTGCGGCTGATCGCTACGATCACCGCGAAGACAGCGACTACTACAGCCACGCCGGTGCGCT GTTCCGTTTGATGAGCGACGAACAGAAAGCGTTGCTGGTCAGCAACATCGCCGGTGCGATGGGGGGTGTTTCGAGTGATG TGATCGACCGTCAGCTGCAGCATTTCTACAAGGCCGATCCGGCGTACGGAGAAGCAATCGCAAAGCTGCTCAACGTACAG CTTAACGAAGTCTAA
Upstream 100 bases:
>100_bases GACCATAAGTTAATGAATTTGTGGCTGTCATATTGATGATCGATACTCCCCAACAAGCCGATTAGCCGGCAGTTCAAGAC CGATAGAGGAAGAAGTTCGC
Downstream 100 bases:
>100_bases ACGAGAAGCAGAACCGCCCTCATTCGGGCGGTTTTTGCGTTATTTAGGCTGCTTTTCTCAGAATATCTTCGCTTTTATTG CGCGAAGTGAGTGACCTTCC
Product: catalase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MSQNKTLTTASGAPVADNQNSRSSGPRGPLLLDDFHLIEKLAHFNRENIPERRVHAKGSGAYGTFTVTRDITQYTSAKLF SAVGKQTPTFLRFSTVGGERGSADTERDPRGFALKFYTEEGNWDIVGNNTPVFFIRDPLKFPDFIHTQKRLPQSNLKSAQ MMWDFWSHSPEALHQVTILFSDRGIPDGYRHMHGFGSHTYSLISAQGERHWVKWHYKTKQGIKNLAPADAARLAGTDPDY AQRDLFEAIERGDFPKWSVCIQIMTEAQAAAHYENPFDVTKTWSQKEFPLIEVGELELNRNPLNYFAEVEQAAFGPSNMV PGVGLSPDRMLQGRVFAYADAHRYRVGTNHQQLPVNAPRSPVNTYQRDGSMAFGSNGGAAPNYEPNSYVESPKQAPHYAE PALALSGAADRYDHREDSDYYSHAGALFRLMSDEQKALLVSNIAGAMGGVSSDVIDRQLQHFYKADPAYGEAIAKLLNVQ LNEV
Sequences:
>Translated_484_residues MSQNKTLTTASGAPVADNQNSRSSGPRGPLLLDDFHLIEKLAHFNRENIPERRVHAKGSGAYGTFTVTRDITQYTSAKLF SAVGKQTPTFLRFSTVGGERGSADTERDPRGFALKFYTEEGNWDIVGNNTPVFFIRDPLKFPDFIHTQKRLPQSNLKSAQ MMWDFWSHSPEALHQVTILFSDRGIPDGYRHMHGFGSHTYSLISAQGERHWVKWHYKTKQGIKNLAPADAARLAGTDPDY AQRDLFEAIERGDFPKWSVCIQIMTEAQAAAHYENPFDVTKTWSQKEFPLIEVGELELNRNPLNYFAEVEQAAFGPSNMV PGVGLSPDRMLQGRVFAYADAHRYRVGTNHQQLPVNAPRSPVNTYQRDGSMAFGSNGGAAPNYEPNSYVESPKQAPHYAE PALALSGAADRYDHREDSDYYSHAGALFRLMSDEQKALLVSNIAGAMGGVSSDVIDRQLQHFYKADPAYGEAIAKLLNVQ LNEV >Mature_483_residues SQNKTLTTASGAPVADNQNSRSSGPRGPLLLDDFHLIEKLAHFNRENIPERRVHAKGSGAYGTFTVTRDITQYTSAKLFS AVGKQTPTFLRFSTVGGERGSADTERDPRGFALKFYTEEGNWDIVGNNTPVFFIRDPLKFPDFIHTQKRLPQSNLKSAQM MWDFWSHSPEALHQVTILFSDRGIPDGYRHMHGFGSHTYSLISAQGERHWVKWHYKTKQGIKNLAPADAARLAGTDPDYA QRDLFEAIERGDFPKWSVCIQIMTEAQAAAHYENPFDVTKTWSQKEFPLIEVGELELNRNPLNYFAEVEQAAFGPSNMVP GVGLSPDRMLQGRVFAYADAHRYRVGTNHQQLPVNAPRSPVNTYQRDGSMAFGSNGGAAPNYEPNSYVESPKQAPHYAEP ALALSGAADRYDHREDSDYYSHAGALFRLMSDEQKALLVSNIAGAMGGVSSDVIDRQLQHFYKADPAYGEAIAKLLNVQL NEV
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=474, Percent_Identity=55.4852320675106, Blast_Score=551, Evalue=1e-157, Organism=Escherichia coli, GI48994891, Length=500, Percent_Identity=41.4, Blast_Score=365, Evalue=1e-102, Organism=Caenorhabditis elegans, GI71998444, Length=477, Percent_Identity=52.6205450733753, Blast_Score=531, Evalue=1e-151, Organism=Caenorhabditis elegans, GI25147792, Length=474, Percent_Identity=51.0548523206751, Blast_Score=511, Evalue=1e-145, Organism=Caenorhabditis elegans, GI25151141, Length=472, Percent_Identity=51.4830508474576, Blast_Score=510, Evalue=1e-145, Organism=Saccharomyces cerevisiae, GI6320462, Length=491, Percent_Identity=48.4725050916497, Blast_Score=449, Evalue=1e-127, Organism=Saccharomyces cerevisiae, GI6321525, Length=534, Percent_Identity=37.8277153558052, Blast_Score=342, Evalue=9e-95, Organism=Drosophila melanogaster, GI17981717, Length=477, Percent_Identity=52.6205450733753, Blast_Score=520, Evalue=1e-148, Organism=Drosophila melanogaster, GI19920968, Length=479, Percent_Identity=46.3465553235908, Blast_Score=467, Evalue=1e-132,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 54007; Mature: 53875
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00437 CATALASE_1 ; PS00438 CATALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQNKTLTTASGAPVADNQNSRSSGPRGPLLLDDFHLIEKLAHFNRENIPERRVHAKGSG CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHCCCCCC AYGTFTVTRDITQYTSAKLFSAVGKQTPTFLRFSTVGGERGSADTERDPRGFALKFYTEE CEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEC GNWDIVGNNTPVFFIRDPLKFPDFIHTQKRLPQSNLKSAQMMWDFWSHSPEALHQVTILF CCEEEECCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHEEEEEE SDRGIPDGYRHMHGFGSHTYSLISAQGERHWVKWHYKTKQGIKNLAPADAARLAGTDPDY ECCCCCHHHHHHHCCCCHHHHEEECCCCCEEEEEEECHHHHHHHCCCCHHHHHCCCCCCH AQRDLFEAIERGDFPKWSVCIQIMTEAQAAAHYENPFDVTKTWSQKEFPLIEVGELELNR HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEECCEEECC NPLNYFAEVEQAAFGPSNMVPGVGLSPDRMLQGRVFAYADAHRYRVGTNHQQLPVNAPRS CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEEEEECCHHEEECCCCCCCCCCCCCC PVNTYQRDGSMAFGSNGGAAPNYEPNSYVESPKQAPHYAEPALALSGAADRYDHREDSDY CHHHHHCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEECCCHHHCCCCCCCHH YSHAGALFRLMSDEQKALLVSNIAGAMGGVSSDVIDRQLQHFYKADPAYGEAIAKLLNVQ HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LNEV HCCC >Mature Secondary Structure SQNKTLTTASGAPVADNQNSRSSGPRGPLLLDDFHLIEKLAHFNRENIPERRVHAKGSG CCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHCCCCCC AYGTFTVTRDITQYTSAKLFSAVGKQTPTFLRFSTVGGERGSADTERDPRGFALKFYTEE CEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEC GNWDIVGNNTPVFFIRDPLKFPDFIHTQKRLPQSNLKSAQMMWDFWSHSPEALHQVTILF CCEEEECCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHEEEEEE SDRGIPDGYRHMHGFGSHTYSLISAQGERHWVKWHYKTKQGIKNLAPADAARLAGTDPDY ECCCCCHHHHHHHCCCCHHHHEEECCCCCEEEEEEECHHHHHHHCCCCHHHHHCCCCCCH AQRDLFEAIERGDFPKWSVCIQIMTEAQAAAHYENPFDVTKTWSQKEFPLIEVGELELNR HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEECCEEECC NPLNYFAEVEQAAFGPSNMVPGVGLSPDRMLQGRVFAYADAHRYRVGTNHQQLPVNAPRS CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEEEEECCHHEEECCCCCCCCCCCCCC PVNTYQRDGSMAFGSNGGAAPNYEPNSYVESPKQAPHYAEPALALSGAADRYDHREDSDY CHHHHHCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEECCCHHHCCCCCCCHH YSHAGALFRLMSDEQKALLVSNIAGAMGGVSSDVIDRQLQHFYKADPAYGEAIAKLLNVQ HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LNEV HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA