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The map label for this gene is ytbD [H]

Identifier: 77461255

GI number: 77461255

Start: 5670927

End: 5672138

Strand: Direct

Name: ytbD [H]

Synonym: Pfl01_5034

Alternate gene names: 77461255

Gene position: 5670927-5672138 (Clockwise)

Preceding gene: 77461253

Following gene: 77461256

Centisome position: 88.08

GC content: 64.11

Gene sequence:

>1212_bases
ATGCCCATTGCCCTGCTCGCGCTGACCCTCAGCGCCTTCGCCATCGGGACGACCGAGTTCGTCATCGTTGGCCTGCTTCC
CACCATCGGCGCCGATCTCGGCGTCAGCCTGCCGTCCGCCGGTCTTCTGGTCAGTTTGTACGCCCTCGGCGTAGCCATCG
GTGCGCCGGTGCTGACCGCCCTCACCGGTAAAGTCCCGCGCAAACTGTTGCTGCTGTCGCTGATGGTGCTGTTCACCCTC
GGTAACCTGCTGGCCTGGCTGGCGCCAAGTTATGAATCGCTGGTAGTGGCGCGGATCGTCACGGGTCTGGCCCATGGCGT
GTTCTTCTCCATCGGCTCGACCATCGCCACCAGCCTGGTGCCCAAGGAAAAAGCCGCCAGTGCGATTGCGATCATGTTCA
CCGGTCTGACCGTGGCGCTGGTCACCGGCGTACCGCTGGGCACGTTCATCGGTCAGCATTTCGGCTGGCGTGAAACCTTC
CTTGCCGTTTCAGCACTGGGCGTGATCGCGTTTATCGGCAGCCTGCTGTATGTGCCGAACAACATTGCCCACAGCAAACC
GGCGTCGCTGTTGCAGCAATTGCAGGTGCTCAAGCAACCGCGTCTGTTGCTGGTCTATGCCATGACGGCCATCGGTTACG
GCGGCTCGTTCATCGCCTTCACGTTTCTGGCACCGATCCTTCAGGACATCTCCGGCTTCAGCGCCGGCACCGTCAGCCTG
GTGTTGCTGGTGTACGGCGTGTCGGTCGCAGTCGGCAACCTCTGGGGCGGCAAACTGGCGGACAAGCGCGGGCCGATCAG
TGCGCTGAAAATCATCTTCGCCCTGCTCGCCGCCGTGCTGTTCGTACTCACTTTCACCGCCGGCAACCCGTGGCTGGCAC
TGGCCACCGTGCTGGTCTGGGGCGCTGTCGCCTTCGGCAACGTGCCGGGCTTGCAGGTGTATGTGGTGCGTCAGGCTGAA
CACCACACACCGCACGCCGTGGACGTCGCATCGGGGCTGAACATTGCCGCGTTCAACCTCGGTATTGCCGGTGGCGCGTG
GGGTGGCGGTTTGATCGTCGAGCACATCGGCCTGATCCATACCGCATGGATCGGCGGTCTGGTGGTGCTGGTGGCATTGG
CCCTGACCGCCTGGAGCGGTCGCCTCGATCGCCTGGGCCCGGTGTACGCCGAACCCGCCGAAGGCTCGGCCCGGATCGTC
ACCGGGCACTGA

Upstream 100 bases:

>100_bases
TTGCGCCCAGATCAAATATCAAATGCCCACCCCTGTATTTTTCCACCCCCCACCAAACCCCGACACTGCGCTCCATTCAA
TCCCCCACCGGAGTGCCGTG

Downstream 100 bases:

>100_bases
TCAAGCCAGCCCGACCGTCCGTAATCCCGTCGAAACTTTCCCCGACCGCCCGCAGTCATCCACTGACAGAGGCCGTATGG
GGACTTTCGACGGGAGGCGG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MPIALLALTLSAFAIGTTEFVIVGLLPTIGADLGVSLPSAGLLVSLYALGVAIGAPVLTALTGKVPRKLLLLSLMVLFTL
GNLLAWLAPSYESLVVARIVTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETF
LAVSALGVIAFIGSLLYVPNNIAHSKPASLLQQLQVLKQPRLLLVYAMTAIGYGGSFIAFTFLAPILQDISGFSAGTVSL
VLLVYGVSVAVGNLWGGKLADKRGPISALKIIFALLAAVLFVLTFTAGNPWLALATVLVWGAVAFGNVPGLQVYVVRQAE
HHTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVEHIGLIHTAWIGGLVVLVALALTAWSGRLDRLGPVYAEPAEGSARIV
TGH

Sequences:

>Translated_403_residues
MPIALLALTLSAFAIGTTEFVIVGLLPTIGADLGVSLPSAGLLVSLYALGVAIGAPVLTALTGKVPRKLLLLSLMVLFTL
GNLLAWLAPSYESLVVARIVTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETF
LAVSALGVIAFIGSLLYVPNNIAHSKPASLLQQLQVLKQPRLLLVYAMTAIGYGGSFIAFTFLAPILQDISGFSAGTVSL
VLLVYGVSVAVGNLWGGKLADKRGPISALKIIFALLAAVLFVLTFTAGNPWLALATVLVWGAVAFGNVPGLQVYVVRQAE
HHTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVEHIGLIHTAWIGGLVVLVALALTAWSGRLDRLGPVYAEPAEGSARIV
TGH
>Mature_402_residues
PIALLALTLSAFAIGTTEFVIVGLLPTIGADLGVSLPSAGLLVSLYALGVAIGAPVLTALTGKVPRKLLLLSLMVLFTLG
NLLAWLAPSYESLVVARIVTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETFL
AVSALGVIAFIGSLLYVPNNIAHSKPASLLQQLQVLKQPRLLLVYAMTAIGYGGSFIAFTFLAPILQDISGFSAGTVSLV
LLVYGVSVAVGNLWGGKLADKRGPISALKIIFALLAAVLFVLTFTAGNPWLALATVLVWGAVAFGNVPGLQVYVVRQAEH
HTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVEHIGLIHTAWIGGLVVLVALALTAWSGRLDRLGPVYAEPAEGSARIVT
GH

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=334, Percent_Identity=43.1137724550898, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1786595, Length=398, Percent_Identity=30.4020100502513, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1787808, Length=391, Percent_Identity=32.2250639386189, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI145693198, Length=364, Percent_Identity=28.8461538461538, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41543; Mature: 41412

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
PIALLALTLSAFAIGTTEFVIVGLLPTIGADLGVSLPSAGLLVSLYALGVAIGAPVLTA
CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LTGKVPRKLLLLSLMVLFTLGNLLAWLAPSYESLVVARIVTGLAHGVFFSIGSTIATSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETFLAVSALGVIAFIGSLLYVPN
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
NIAHSKPASLLQQLQVLKQPRLLLVYAMTAIGYGGSFIAFTFLAPILQDISGFSAGTVSL
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
VLLVYGVSVAVGNLWGGKLADKRGPISALKIIFALLAAVLFVLTFTAGNPWLALATVLVW
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GAVAFGNVPGLQVYVVRQAEHHTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVEHIGLIH
HHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
TAWIGGLVVLVALALTAWSGRLDRLGPVYAEPAEGSARIVTGH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]