Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is yfaT [C]

Identifier: 77461222

GI number: 77461222

Start: 5637013

End: 5637651

Strand: Reverse

Name: yfaT [C]

Synonym: Pfl01_5001

Alternate gene names: 77461222

Gene position: 5637651-5637013 (Counterclockwise)

Preceding gene: 77461223

Following gene: 77461221

Centisome position: 87.56

GC content: 62.13

Gene sequence:

>639_bases
GTGACCGGACTGATTCGCAGCCTCGGCTTGCTGGCGCTTTTGCTCAGCGCCGGTGCCCGAGCCGTTGAGACTCCGGCCCT
CGATCCGCAGCAGTCCCAGGTCTTTCGCGCCTGGTTCGTGCGCATCGCCCAGGAACAATTGAGCAAAGGTCCGAGCCCGC
GCTGGTATCAGCAGGACTGCGCGGGACTGGTGCGTTTCGCCGCCAACGAAGCGCTGAAAGTCCATGACGACAAATGGCTG
CGCAGCAATGGCGTGTCCAACCGCTACCTGCCGCCGGAGCTGGACCTGAGCGCCGACCAGCGCAAGCTCGCCCAGCAATG
GCAGCAGGGCGGCGGCAAGGTCGGGCCCTACGTCAACGCGATCAAACTGATTCAGTTCAACAGCCATCTGATCGGCCGCG
ACGTGTCCCAGGCACGGCCCGGCGATCTGATGTTTTTCGATCAGGGCGACGACCAGCACCTGATGATCTGGATGGGCCGC
TACATCGCCTATCACACCGGCACGACCACCCCAACCGACAACGGCATGCGTTCGGCAAGCCTGCAGCAACTCATGACATG
GAAGGACACCCGATGGATACCCGACGCAGCCAACCCCAACTTCATCGGCGTCTATCGACTGAATTTTCTCTCCCAATGA

Upstream 100 bases:

>100_bases
TGCGCACCCTCGGCGGCATGGGCAAATACGCCCTGACCTTGCCGGAAGGCAGCGAGCCTGACGGTCACTGGCAATGGCTG
CCGCTGGAGTGGAAAGCGCT

Downstream 100 bases:

>100_bases
CCGGTGCCCGCATGCTGCGTTTACTGCCTTTTCTGTTGCTGTTGACCCTGCCGTTTTCGGCCGTGAATGCCGAAGACACC
GTGGAGCCAAGCGGCTACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTGLIRSLGLLALLLSAGARAVETPALDPQQSQVFRAWFVRIAQEQLSKGPSPRWYQQDCAGLVRFAANEALKVHDDKWL
RSNGVSNRYLPPELDLSADQRKLAQQWQQGGGKVGPYVNAIKLIQFNSHLIGRDVSQARPGDLMFFDQGDDQHLMIWMGR
YIAYHTGTTTPTDNGMRSASLQQLMTWKDTRWIPDAANPNFIGVYRLNFLSQ

Sequences:

>Translated_212_residues
MTGLIRSLGLLALLLSAGARAVETPALDPQQSQVFRAWFVRIAQEQLSKGPSPRWYQQDCAGLVRFAANEALKVHDDKWL
RSNGVSNRYLPPELDLSADQRKLAQQWQQGGGKVGPYVNAIKLIQFNSHLIGRDVSQARPGDLMFFDQGDDQHLMIWMGR
YIAYHTGTTTPTDNGMRSASLQQLMTWKDTRWIPDAANPNFIGVYRLNFLSQ
>Mature_211_residues
TGLIRSLGLLALLLSAGARAVETPALDPQQSQVFRAWFVRIAQEQLSKGPSPRWYQQDCAGLVRFAANEALKVHDDKWLR
SNGVSNRYLPPELDLSADQRKLAQQWQQGGGKVGPYVNAIKLIQFNSHLIGRDVSQARPGDLMFFDQGDDQHLMIWMGRY
IAYHTGTTTPTDNGMRSASLQQLMTWKDTRWIPDAANPNFIGVYRLNFLSQ

Specific function: Unknown

COG id: COG3234

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfaT and T.maritima TM0986 [H]

Homologues:

Organism=Escherichia coli, GI87082068, Length=204, Percent_Identity=69.6078431372549, Blast_Score=317, Evalue=5e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009558 [H]

Pfam domain/function: PF06672 DUF1175 [H]

EC number: NA

Molecular weight: Translated: 23902; Mature: 23771

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLIRSLGLLALLLSAGARAVETPALDPQQSQVFRAWFVRIAQEQLSKGPSPRWYQQDC
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AGLVRFAANEALKVHDDKWLRSNGVSNRYLPPELDLSADQRKLAQQWQQGGGKVGPYVNA
HHHHHHHHCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHE
IKLIQFNSHLIGRDVSQARPGDLMFFDQGDDQHLMIWMGRYIAYHTGTTTPTDNGMRSAS
EEEEEECCCHHCCCHHHCCCCCEEEEECCCCCEEEEEEHHHHHEECCCCCCCCCCHHHHH
LQQLMTWKDTRWIPDAANPNFIGVYRLNFLSQ
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
TGLIRSLGLLALLLSAGARAVETPALDPQQSQVFRAWFVRIAQEQLSKGPSPRWYQQDC
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AGLVRFAANEALKVHDDKWLRSNGVSNRYLPPELDLSADQRKLAQQWQQGGGKVGPYVNA
HHHHHHHHCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHE
IKLIQFNSHLIGRDVSQARPGDLMFFDQGDDQHLMIWMGRYIAYHTGTTTPTDNGMRSAS
EEEEEECCCHHCCCHHHCCCCCEEEEECCCCCEEEEEEHHHHHEECCCCCCCCCCHHHHH
LQQLMTWKDTRWIPDAANPNFIGVYRLNFLSQ
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]