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The map label for this gene is yohK [H]

Identifier: 77461201

GI number: 77461201

Start: 5611167

End: 5611883

Strand: Reverse

Name: yohK [H]

Synonym: Pfl01_4980

Alternate gene names: 77461201

Gene position: 5611883-5611167 (Counterclockwise)

Preceding gene: 77461202

Following gene: 77461200

Centisome position: 87.16

GC content: 65.41

Gene sequence:

>717_bases
ATGCTGTTCGACTGGCAAGGTGCCTGGGCGTCGGTGATTCACCATCCCCTGTTCGGCATCGGCATCACTCTGGGTGCCTA
TCAACTGGTGCTGGCTGCGTTCGAGAAAACCCGCTGGATCTTTCTGCAACCGGTGCTGGTCTCGATGCTGTTGGTGATCG
GCGTGCTGGTCGGCTGCGGCCTGACCTACGCCGAGTACCGCAAGAGCACCGAGATCCTCAGTATCTTGCTCGGGCCGGCA
ACCGTGGCGCTGGCCGTGCCGCTGTACCTGAACCTGCGACGCATCCGCCAATTGTTCTGGCCGATTTTTACTACGCTGGT
GATAGGCGGCGTGGTCGCCACGGGCATGGGCGTGGCGCTGGGCTGGTGGTTCGGGGCCGATCACATGATCCTGATGACCA
TGGCGCCCAAGTCGGTCACCTCGCCGATCGCCATGCTGGTGGCCGAGCAGATCGGTGGCGTCGCGGCACTGGCGGCGGTG
TTCGTGTTGATCACCGGGGTGATCGGCGCGATCTTCGGCCCGGCGCTGCTGACCCGCCTCGGTGTGCACAGCCCCGAGGC
GCGCGGCATGGCGCTGGGCATGACGGCGCATGCGGTCGGCACGTCGGTGGCGCTGCAGGAAAGCGATGAGTGCGGCGCCT
TTGCGGCGCTGGCGATGAGTTTGATGGGCGTGGCCACGGCGGTGTTCCTGCCGTTGGCGGTGTCGATGGTGGTGTAA

Upstream 100 bases:

>100_bases
TCGGTGCGCTGGTGGTCTCGCTGATTCTGTCCATGGCCTTTGCCGGCATACTGATGCAACGGCTGGTCAAGCGCCACGCG
CCGCATTCGGAGGAGTCCTG

Downstream 100 bases:

>100_bases
GGAAATGTCTATGAGTCTGCCGCTTTTTCCGCTGAACACGGTGCTGTTTCCCGGCTGCAATCTGGATTTGCAGATCTTCG
AGGCGCGCTACCTGGACATG

Product: LrgB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLFDWQGAWASVIHHPLFGIGITLGAYQLVLAAFEKTRWIFLQPVLVSMLLVIGVLVGCGLTYAEYRKSTEILSILLGPA
TVALAVPLYLNLRRIRQLFWPIFTTLVIGGVVATGMGVALGWWFGADHMILMTMAPKSVTSPIAMLVAEQIGGVAALAAV
FVLITGVIGAIFGPALLTRLGVHSPEARGMALGMTAHAVGTSVALQESDECGAFAALAMSLMGVATAVFLPLAVSMVV

Sequences:

>Translated_238_residues
MLFDWQGAWASVIHHPLFGIGITLGAYQLVLAAFEKTRWIFLQPVLVSMLLVIGVLVGCGLTYAEYRKSTEILSILLGPA
TVALAVPLYLNLRRIRQLFWPIFTTLVIGGVVATGMGVALGWWFGADHMILMTMAPKSVTSPIAMLVAEQIGGVAALAAV
FVLITGVIGAIFGPALLTRLGVHSPEARGMALGMTAHAVGTSVALQESDECGAFAALAMSLMGVATAVFLPLAVSMVV
>Mature_238_residues
MLFDWQGAWASVIHHPLFGIGITLGAYQLVLAAFEKTRWIFLQPVLVSMLLVIGVLVGCGLTYAEYRKSTEILSILLGPA
TVALAVPLYLNLRRIRQLFWPIFTTLVIGGVVATGMGVALGWWFGADHMILMTMAPKSVTSPIAMLVAEQIGGVAALAAV
FVLITGVIGAIFGPALLTRLGVHSPEARGMALGMTAHAVGTSVALQESDECGAFAALAMSLMGVATAVFLPLAVSMVV

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=197, Percent_Identity=40.6091370558376, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25035; Mature: 25035

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDWQGAWASVIHHPLFGIGITLGAYQLVLAAFEKTRWIFLQPVLVSMLLVIGVLVGCG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHCC
LTYAEYRKSTEILSILLGPATVALAVPLYLNLRRIRQLFWPIFTTLVIGGVVATGMGVAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWWFGADHMILMTMAPKSVTSPIAMLVAEQIGGVAALAAVFVLITGVIGAIFGPALLTRL
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVHSPEARGMALGMTAHAVGTSVALQESDECGAFAALAMSLMGVATAVFLPLAVSMVV
CCCCCCCCCEEECHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLFDWQGAWASVIHHPLFGIGITLGAYQLVLAAFEKTRWIFLQPVLVSMLLVIGVLVGCG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHCC
LTYAEYRKSTEILSILLGPATVALAVPLYLNLRRIRQLFWPIFTTLVIGGVVATGMGVAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWWFGADHMILMTMAPKSVTSPIAMLVAEQIGGVAALAAVFVLITGVIGAIFGPALLTRL
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVHSPEARGMALGMTAHAVGTSVALQESDECGAFAALAMSLMGVATAVFLPLAVSMVV
CCCCCCCCCEEECHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]