| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is sam [H]
Identifier: 77461129
GI number: 77461129
Start: 5531114
End: 5531992
Strand: Reverse
Name: sam [H]
Synonym: Pfl01_4908
Alternate gene names: 77461129
Gene position: 5531992-5531114 (Counterclockwise)
Preceding gene: 77461130
Following gene: 77461127
Centisome position: 85.92
GC content: 61.89
Gene sequence:
>879_bases ATGACCGTCAGCACTCCGCTTTCCGGCGTCAACCAACCCTTCAAGGGGATCTTGCTGATTGTCGTGGCAACCTTCCTGTT CTCCAGCCACGACGCGCTGTCGAAATACCTTTCGGGTTTTTATCCGATCGTGATGGTGGTGTGGGCGCGGTATCTGGTGC ACACGCTGCTGATGGCGGGGATTTTCCTGCCGCAGTCCGGGCTGCGCGTGCTGCGCACCAAACGCCCGTTGTGGCAGTTG GCACGGGCGTTGTGCCTGCTGGGCACCAGTCTTTTTTTCACCACGGCGTTGCTGTACATCCCGCTGGCCGAAGCCACGGC GGTCAACTTTCTTGCGCCGGTGCTGGTGACGGCGCTGTCGGTGCCGCTGCTCAAGGAACGGGTGACGCGCGGTCAGTGGA TCGCGGTGGTGTGCGGATTCATCGGTGTGCTGATCATCGTCCATCCGGGCGGTGAACTGTTCACCCCGGCGATTTTGTTG CCGTTCTGCTCGGCGCTGTTTTTCTGCTTCTATCAGTTGCTCACCCGCAAGCTCGCGGAAGTCGACAGCCCGACCACCAG CAACTTTTTCGCCGGGCTGTGCAACACGCTGGTGATGAGTGCACTGGTGCCGTTCTTCTGGCAGGTGCCGAGCCTGGGGC ATGCGTTGTTGATGCTGGCGCTGGGCAGTTGCGGAATGACCGCGCACCTGTTTCTGACCCAGGCATTCCGCCATGCCGCG CCGGCGTTGCTGGCGCCGTTCGGTTATTGCCAGATCGTGTTTGCGGGGTTGCTGGGCTGGTTGCTGTTTGCTCACACGCC AACCCTGATGACGGTGATCGGGATCGCGGTGATCTGTTGCAGCGGGCTGGCGGCAGCGTGGCAGCAGAGCCGGCGCTAA
Upstream 100 bases:
>100_bases CGACCGGACACGGGAATTGTTGGCCCGGCTTTAAGTCTGCTTCAAGGGGCGAGGGCGCCTGCGTCCTCGTCACCGTTTAT TTTTCATTCAGAGAGAGCCA
Downstream 100 bases:
>100_bases AAGCAAAACCGGCCTGAAATCAGGCCGGTCGGTGCAGGAAGGTTATTCAGTATTGGAAGGCTACTCAGTGACGGTAGGAA TCTTGCGCGGTGCCATGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MTVSTPLSGVNQPFKGILLIVVATFLFSSHDALSKYLSGFYPIVMVVWARYLVHTLLMAGIFLPQSGLRVLRTKRPLWQL ARALCLLGTSLFFTTALLYIPLAEATAVNFLAPVLVTALSVPLLKERVTRGQWIAVVCGFIGVLIIVHPGGELFTPAILL PFCSALFFCFYQLLTRKLAEVDSPTTSNFFAGLCNTLVMSALVPFFWQVPSLGHALLMLALGSCGMTAHLFLTQAFRHAA PALLAPFGYCQIVFAGLLGWLLFAHTPTLMTVIGIAVICCSGLAAAWQQSRR
Sequences:
>Translated_292_residues MTVSTPLSGVNQPFKGILLIVVATFLFSSHDALSKYLSGFYPIVMVVWARYLVHTLLMAGIFLPQSGLRVLRTKRPLWQL ARALCLLGTSLFFTTALLYIPLAEATAVNFLAPVLVTALSVPLLKERVTRGQWIAVVCGFIGVLIIVHPGGELFTPAILL PFCSALFFCFYQLLTRKLAEVDSPTTSNFFAGLCNTLVMSALVPFFWQVPSLGHALLMLALGSCGMTAHLFLTQAFRHAA PALLAPFGYCQIVFAGLLGWLLFAHTPTLMTVIGIAVICCSGLAAAWQQSRR >Mature_291_residues TVSTPLSGVNQPFKGILLIVVATFLFSSHDALSKYLSGFYPIVMVVWARYLVHTLLMAGIFLPQSGLRVLRTKRPLWQLA RALCLLGTSLFFTTALLYIPLAEATAVNFLAPVLVTALSVPLLKERVTRGQWIAVVCGFIGVLIIVHPGGELFTPAILLP FCSALFFCFYQLLTRKLAEVDSPTTSNFFAGLCNTLVMSALVPFFWQVPSLGHALLMLALGSCGMTAHLFLTQAFRHAAP ALLAPFGYCQIVFAGLLGWLLFAHTPTLMTVIGIAVICCSGLAAAWQQSRR
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31767; Mature: 31635
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSTPLSGVNQPFKGILLIVVATFLFSSHDALSKYLSGFYPIVMVVWARYLVHTLLMAG CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFLPQSGLRVLRTKRPLWQLARALCLLGTSLFFTTALLYIPLAEATAVNFLAPVLVTALS HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPLLKERVTRGQWIAVVCGFIGVLIIVHPGGELFTPAILLPFCSALFFCFYQLLTRKLAE HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDSPTTSNFFAGLCNTLVMSALVPFFWQVPSLGHALLMLALGSCGMTAHLFLTQAFRHAA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH PALLAPFGYCQIVFAGLLGWLLFAHTPTLMTVIGIAVICCSGLAAAWQQSRR HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TVSTPLSGVNQPFKGILLIVVATFLFSSHDALSKYLSGFYPIVMVVWARYLVHTLLMAG CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFLPQSGLRVLRTKRPLWQLARALCLLGTSLFFTTALLYIPLAEATAVNFLAPVLVTALS HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPLLKERVTRGQWIAVVCGFIGVLIIVHPGGELFTPAILLPFCSALFFCFYQLLTRKLAE HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDSPTTSNFFAGLCNTLVMSALVPFFWQVPSLGHALLMLALGSCGMTAHLFLTQAFRHAA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH PALLAPFGYCQIVFAGLLGWLLFAHTPTLMTVIGIAVICCSGLAAAWQQSRR HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA