Click here to switch to the map view.

The map label for this gene is rsmC

Identifier: 77460933

GI number: 77460933

Start: 5320633

End: 5321631

Strand: Direct

Name: rsmC

Synonym: Pfl01_4712

Alternate gene names: 77460933

Gene position: 5320633-5321631 (Clockwise)

Preceding gene: 77460932

Following gene: 77460934

Centisome position: 82.64

GC content: 61.66

Gene sequence:

>999_bases
ATGGATCCGCGCAGTGAAGTACTGCTTCGTCAGGCCGAGTTATTCCAGGGTTCGGTGTTGCTGGCCGGTTTGCCTGCCGA
TGATCTGCTGGGGCGCCTGCCCGATGCGTTTGGCTGGTGCTGGCACGCCGGCGATCAGGCTGCACTCGATGCGCGCTTCG
AAGGGCGCAGCCATTTTGGCGTGAACGTGCCGGAGCGCTCGTTCGACACCGCCGTGGTGTTCCTGCCCAAGGCCAAGGAT
CTGACCGATTACATCCTCAATGCCGTGGCTTCGCGTCTGGCCGGACGTGAGGTGTATCTGGTCGGGGAAAAGCGCAGCGG
CATCGAGGGCGCGTCCAAACAGCTCAACCCGTTCGGCAAACCACGCAAGCTCGACAGCGCACGACACTGTCAGCTGTGGC
AAGTGACGGTGGCCAACGCACCTGAAGCCAAACCGCTGGAAAGCCTGGCGCAAACCTACGAACTGCCGCTGGCCGAAGGC
CCGTTGAAAGTCATCAGCCTGCCGGGCGTGTTCAGCCATGGCCGACTGGATCGCGGCAGCGCCCTGCTGCTGGAACACCT
GGACAAACTGCCGAGCGGTCATTTGCTGGACTTCGGTTGCGGCGCCGGCGTACTTGGCGCGGCGGTCAAGCGTCGTTACC
CGCACAATCAGGTCACGTTGCTCGACGTTGATGCCTTCGCTGCCGCCAGCAGCCGTTTGACTCTGGCAGCCAACGGTCTG
GAAGCCGAGGTGCTGACCGGTGACGGCATCGACGCCGCGCCGATGGGTTTGAACGCGATTCTGAGCAATCCACCGTTCCA
TGTCGGCGTCCACACCGATTATTTCGCCACCGAGAATTTGCTGCGAAAAGCGGCCAAACATCTGAAAAACGGCGGCGAAC
TTCGTCTGGTTGCCAACAGCTTCCTGAAATACCAGCCGCTGATCGAGGAGCATCTCGGAGTCTGTGCGATCAAGGCCGAA
GGCAATGGTTTCCGGATTTACCGGGCCAAGCGCGGCTGA

Upstream 100 bases:

>100_bases
CGTCGGCCAACTGGTCGAAAACACCCAGGCGTTCTTCAGCGGTAAGGCGCTGCGGGTCGTCAGTTGATAAACTGCGGCAC
TTTTTTTCACAGGAGCAGTT

Downstream 100 bases:

>100_bases
AAATTAGCACTTGCCGAATGGATTACGCCTAGGCAGAATCCGCTTCGTCCTAGGGGAGTAGTCTCCCACGAGCGCCAAGC
TCGTCCGGCATACGTCAACA

Product: 16S rRNA m(2)G 1207 methyltransferase

Products: NA

Alternate protein names: 16S rRNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rsmC

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDPRSEVLLRQAELFQGSVLLAGLPADDLLGRLPDAFGWCWHAGDQAALDARFEGRSHFGVNVPERSFDTAVVFLPKAKD
LTDYILNAVASRLAGREVYLVGEKRSGIEGASKQLNPFGKPRKLDSARHCQLWQVTVANAPEAKPLESLAQTYELPLAEG
PLKVISLPGVFSHGRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNQVTLLDVDAFAAASSRLTLAANGL
EAEVLTGDGIDAAPMGLNAILSNPPFHVGVHTDYFATENLLRKAAKHLKNGGELRLVANSFLKYQPLIEEHLGVCAIKAE
GNGFRIYRAKRG

Sequences:

>Translated_332_residues
MDPRSEVLLRQAELFQGSVLLAGLPADDLLGRLPDAFGWCWHAGDQAALDARFEGRSHFGVNVPERSFDTAVVFLPKAKD
LTDYILNAVASRLAGREVYLVGEKRSGIEGASKQLNPFGKPRKLDSARHCQLWQVTVANAPEAKPLESLAQTYELPLAEG
PLKVISLPGVFSHGRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNQVTLLDVDAFAAASSRLTLAANGL
EAEVLTGDGIDAAPMGLNAILSNPPFHVGVHTDYFATENLLRKAAKHLKNGGELRLVANSFLKYQPLIEEHLGVCAIKAE
GNGFRIYRAKRG
>Mature_332_residues
MDPRSEVLLRQAELFQGSVLLAGLPADDLLGRLPDAFGWCWHAGDQAALDARFEGRSHFGVNVPERSFDTAVVFLPKAKD
LTDYILNAVASRLAGREVYLVGEKRSGIEGASKQLNPFGKPRKLDSARHCQLWQVTVANAPEAKPLESLAQTYELPLAEG
PLKVISLPGVFSHGRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNQVTLLDVDAFAAASSRLTLAANGL
EAEVLTGDGIDAAPMGLNAILSNPPFHVGVHTDYFATENLLRKAAKHLKNGGELRLVANSFLKYQPLIEEHLGVCAIKAE
GNGFRIYRAKRG

Specific function: Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle

COG id: COG2813

COG function: function code J; 16S RNA G1207 methylase RsmC

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmC family

Homologues:

Organism=Escherichia coli, GI1790830, Length=337, Percent_Identity=38.5756676557863, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI87082206, Length=274, Percent_Identity=29.1970802919708, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMC_PSEPF (Q3K705)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_350440.1
- ProteinModelPortal:   Q3K705
- SMR:   Q3K705
- STRING:   Q3K705
- GeneID:   3714804
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_4712
- eggNOG:   COG2813
- HOGENOM:   HBG296757
- OMA:   RHCQLWQ
- ProtClustDB:   CLSK868791
- BioCyc:   PFLU205922:PFL_4712-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01862
- InterPro:   IPR013675
- InterPro:   IPR007848

Pfam domain/function: PF05175 MTS; PF08468 MTS_N

EC number: =2.1.1.172

Molecular weight: Translated: 35850; Mature: 35850

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPRSEVLLRQAELFQGSVLLAGLPADDLLGRLPDAFGWCWHAGDQAALDARFEGRSHFG
CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCHHHHHEECCCCCCEEEEEECCCCCCC
VNVPERSFDTAVVFLPKAKDLTDYILNAVASRLAGREVYLVGEKRSGIEGASKQLNPFGK
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCC
PRKLDSARHCQLWQVTVANAPEAKPLESLAQTYELPLAEGPLKVISLPGVFSHGRLDRGS
CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCH
ALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNQVTLLDVDAFAAASSRLTLAANGL
HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCEEEEECCC
EAEVLTGDGIDAAPMGLNAILSNPPFHVGVHTDYFATENLLRKAAKHLKNGGELRLVANS
EEEEEECCCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEHH
FLKYQPLIEEHLGVCAIKAEGNGFRIYRAKRG
HHHHCHHHHHCCCEEEEEECCCCEEEEEECCC
>Mature Secondary Structure
MDPRSEVLLRQAELFQGSVLLAGLPADDLLGRLPDAFGWCWHAGDQAALDARFEGRSHFG
CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCHHHHHEECCCCCCEEEEEECCCCCCC
VNVPERSFDTAVVFLPKAKDLTDYILNAVASRLAGREVYLVGEKRSGIEGASKQLNPFGK
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCC
PRKLDSARHCQLWQVTVANAPEAKPLESLAQTYELPLAEGPLKVISLPGVFSHGRLDRGS
CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCH
ALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNQVTLLDVDAFAAASSRLTLAANGL
HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCEEEEECCC
EAEVLTGDGIDAAPMGLNAILSNPPFHVGVHTDYFATENLLRKAAKHLKNGGELRLVANS
EEEEEECCCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEHH
FLKYQPLIEEHLGVCAIKAEGNGFRIYRAKRG
HHHHCHHHHHCCCEEEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA