Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 77460919

GI number: 77460919

Start: 5300144

End: 5301238

Strand: Reverse

Name: yhcM [H]

Synonym: Pfl01_4698

Alternate gene names: 77460919

Gene position: 5301238-5300144 (Counterclockwise)

Preceding gene: 77460920

Following gene: 77460917

Centisome position: 82.34

GC content: 58.81

Gene sequence:

>1095_bases
ATGACGCCCCTAGAACGATATCAAGCTGATCTGAAACGCCCGGATTTCTTCCATGATGCGGCGCAGGAAACTGCCGTGCG
TCATCTGCAACGCCTGTATGACGATCTGATCGCGGCCGAGCAGAACAAGCCGGGTTTGCTGGGCAAGCTGTTTGGCAAAA
AGGATCAGACGCCGGTCAAGGGCCTGTACTTCTGGGGCGGCGTGGGTCGCGGCAAGACTTACCTGGTGGACACCTTCTTC
GAAGCGCTGCCATTCAAGGAAAAGACCCGCACTCACTTCCACCGCTTCATGAAGCGTGTACACGAAGAGATGAAAACCCT
CGGCGGCGAGAAAAACCCGCTGACCATCATCGCCAAGCGTTTTGCGACTGAATCGCGGGTCATCTGCTTCGATGAATTTT
TCGTTTCCGACATCACCGACGCCATGATCCTCGGCACGCTGATGGAAGAGCTGTTCAAGAACGGCGTGACCCTGGTCGCC
ACGTCGAACATCGTGCCGGACGGCCTGTACAAGGACGGCCTGCAACGCGCGCGCTTCCTGCCGGCCATCGCGCTGATCAA
GCAGAACACCGAGATCGTCAACGTCGACAGCGGCGTCGACTACCGTCTGCGCCACCTCGAACAAGCGGAGCTGTTCCACT
ATCCGCTGGACGAAGCCGCTCACGAAAGCCTGCGCAAGAGCTTCCGCGCGCTGACGCCTGAGTGCACGGCGGCGGTGGAA
AACGATGTGCTGATCATCGAGAACCGCGAAATCCGTGCCCTGCGTACTTGCGATGACGTGGCCTGGTTCGACTTCCGCGA
ACTGTGCGACGGCCCGCGCAGCCAGAACGACTACATCGAACTGGGCAAGATCTTCCACGCCGTGCTGCTCAGTGGCGTGG
AGCAGATGAGCGTCACCACCGACGACATCGCCCGACGCTTCATCAACATGGTCGACGAGTTCTACGACCGTAACGTCAAA
CTGATCATTTCTGCCGAAGTCGAGTTGAAAGACCTGTACACCGGCGGGCGTCTGACGTTCGAGTTCCAGCGTACCCTCAG
CCGTCTGCTGGAGATGCAATCGCACGAATTCCTGTCCCGGGCGCACAAGCCTTAA

Upstream 100 bases:

>100_bases
TCAGGAATAATCAACGGCTCGGCCCGACCAAGGGCCGATTGCCATTCCCACGGGCCATCGCTACAGTGACGGCCCGTTTT
TGTTGCCTTGCTAACGAATT

Downstream 100 bases:

>100_bases
GCGGATTCGGCAAACAAAAAGGGCCTGCAGATGCAGGCCCTTTTTTGTGTCTGGTCGAATCGTCAGGCAGCTTGCTGGAA
CTGCTGCCGGTACTGGTTCG

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MTPLERYQADLKRPDFFHDAAQETAVRHLQRLYDDLIAAEQNKPGLLGKLFGKKDQTPVKGLYFWGGVGRGKTYLVDTFF
EALPFKEKTRTHFHRFMKRVHEEMKTLGGEKNPLTIIAKRFATESRVICFDEFFVSDITDAMILGTLMEELFKNGVTLVA
TSNIVPDGLYKDGLQRARFLPAIALIKQNTEIVNVDSGVDYRLRHLEQAELFHYPLDEAAHESLRKSFRALTPECTAAVE
NDVLIIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLLSGVEQMSVTTDDIARRFINMVDEFYDRNVK
LIISAEVELKDLYTGGRLTFEFQRTLSRLLEMQSHEFLSRAHKP

Sequences:

>Translated_364_residues
MTPLERYQADLKRPDFFHDAAQETAVRHLQRLYDDLIAAEQNKPGLLGKLFGKKDQTPVKGLYFWGGVGRGKTYLVDTFF
EALPFKEKTRTHFHRFMKRVHEEMKTLGGEKNPLTIIAKRFATESRVICFDEFFVSDITDAMILGTLMEELFKNGVTLVA
TSNIVPDGLYKDGLQRARFLPAIALIKQNTEIVNVDSGVDYRLRHLEQAELFHYPLDEAAHESLRKSFRALTPECTAAVE
NDVLIIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLLSGVEQMSVTTDDIARRFINMVDEFYDRNVK
LIISAEVELKDLYTGGRLTFEFQRTLSRLLEMQSHEFLSRAHKP
>Mature_363_residues
TPLERYQADLKRPDFFHDAAQETAVRHLQRLYDDLIAAEQNKPGLLGKLFGKKDQTPVKGLYFWGGVGRGKTYLVDTFFE
ALPFKEKTRTHFHRFMKRVHEEMKTLGGEKNPLTIIAKRFATESRVICFDEFFVSDITDAMILGTLMEELFKNGVTLVAT
SNIVPDGLYKDGLQRARFLPAIALIKQNTEIVNVDSGVDYRLRHLEQAELFHYPLDEAAHESLRKSFRALTPECTAAVEN
DVLIIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLLSGVEQMSVTTDDIARRFINMVDEFYDRNVKL
IISAEVELKDLYTGGRLTFEFQRTLSRLLEMQSHEFLSRAHKP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=406, Percent_Identity=36.4532019704434, Blast_Score=248, Evalue=5e-66,
Organism=Escherichia coli, GI1789627, Length=372, Percent_Identity=51.3440860215054, Blast_Score=357, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17505769, Length=349, Percent_Identity=31.8051575931232, Blast_Score=190, Evalue=9e-49,
Organism=Saccharomyces cerevisiae, GI6320783, Length=407, Percent_Identity=30.2211302211302, Blast_Score=166, Evalue=6e-42,
Organism=Drosophila melanogaster, GI20129913, Length=351, Percent_Identity=35.042735042735, Blast_Score=194, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41979; Mature: 41847

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLERYQADLKRPDFFHDAAQETAVRHLQRLYDDLIAAEQNKPGLLGKLFGKKDQTPVK
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC
GLYFWGGVGRGKTYLVDTFFEALPFKEKTRTHFHRFMKRVHEEMKTLGGEKNPLTIIAKR
EEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FATESRVICFDEFFVSDITDAMILGTLMEELFKNGVTLVATSNIVPDGLYKDGLQRARFL
HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH
PAIALIKQNTEIVNVDSGVDYRLRHLEQAELFHYPLDEAAHESLRKSFRALTPECTAAVE
HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCC
NDVLIIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLLSGVEQMSVTT
CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
DDIARRFINMVDEFYDRNVKLIISAEVELKDLYTGGRLTFEFQRTLSRLLEMQSHEFLSR
HHHHHHHHHHHHHHHCCCEEEEEEECEEHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHH
AHKP
CCCC
>Mature Secondary Structure 
TPLERYQADLKRPDFFHDAAQETAVRHLQRLYDDLIAAEQNKPGLLGKLFGKKDQTPVK
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC
GLYFWGGVGRGKTYLVDTFFEALPFKEKTRTHFHRFMKRVHEEMKTLGGEKNPLTIIAKR
EEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FATESRVICFDEFFVSDITDAMILGTLMEELFKNGVTLVATSNIVPDGLYKDGLQRARFL
HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH
PAIALIKQNTEIVNVDSGVDYRLRHLEQAELFHYPLDEAAHESLRKSFRALTPECTAAVE
HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCC
NDVLIIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLLSGVEQMSVTT
CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
DDIARRFINMVDEFYDRNVKLIISAEVELKDLYTGGRLTFEFQRTLSRLLEMQSHEFLSR
HHHHHHHHHHHHHHHCCCEEEEEEECEEHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHH
AHKP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]