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The map label for this gene is rodZ [H]

Identifier: 77460823

GI number: 77460823

Start: 5203720

End: 5204778

Strand: Reverse

Name: rodZ [H]

Synonym: Pfl01_4602

Alternate gene names: 77460823

Gene position: 5204778-5203720 (Counterclockwise)

Preceding gene: 77460824

Following gene: 77460822

Centisome position: 80.84

GC content: 63.93

Gene sequence:

>1059_bases
ATGAAAGCGGCGCATCCCGAAGTTGTAGCAGCGAATCGCGTTAACCCCGGTGAGACCCTGCGCCAGGCCCGCGAAAGCAA
TGGCTGGTCGCTGGCCGAAGTGGCCCTCAAGCTCAACCTCACCGTGACTTCCCTGAGCAATCTTGAAGCCGGCGCATTCG
ACAAGTTGCCCGGGCATACCTTCGCTCGCGGCTACATTCGCGCCTACGCCAAATTGCTCGGCATGGATCAGACCGTTCTG
GTCCAGCAATTCGACCAGTCTACCGGCACCGATTCCCAAGGCAGCAACGTCCACGCTCTGGGCCGTATCGAAGAGCCGGT
ACGGGTTTCCCACACCATTTTGCGTATCGTCAGCCTGTTGCTGCTGATCGCAGTCATCGGCGGTGGTTTCGTCTGGTGGC
AGGATCAGACTTCGCAGCGCACCAAGGACCTGATTGGCCTGGCCCCGGAGCACGTCGAAGTCGAAGGCGCCGATGGCACC
ACCCAGATTCATCCGCTCGACGAGCCGGAAGATCAGGCAGTCGCGGAAGGCGAAGCCGAGGGCTCGACCGCTCTGGCACT
GCCTCAATCGGAATCCACGGCTGAATCGACCGGCGCCGAGACCGATGCCGCGGCTCCAGCGACTGCACCGGTTGCTCCGG
CACCTGCTGCGCCAGCCGCTACTCCGACTGCACCGGCTCATACGCCAGCGCCTGTGGTTGCTGCTCCTGCAAATCCGGCA
CCTGCCGCTCCGGCCACGCCTGCACCGACCGTTACTGCCCCGGCAGCTCCGGCCGTCGCGGCACCCGCGCCGACAGCGCC
CGTTGCTCCGGCTGCTGGTCAAGGCCAGGTTCAGGTGCAGTTCATCGCCGATTGCTGGACTCAAGTGACCGATGGCAGCG
GCAAAGTGCTGTACAGCGGCCTCAAGCGTAAGGGCGACAGCTTGTCTGTCGTCGGCAAGCCTCCGTTTGCCGTGCGTCTG
GGCGTTGCCCGTGGCGCGCAGGTCAGCTACAACGGCCAGCCGGTCGATGTCGCTCCGTTCACCAGTGGCGAGACTGCTCG
CCTGAAGTTGGGTCAATAA

Upstream 100 bases:

>100_bases
AAGTATTTGAAGATCGCGACAAGGCCGCCAGTGCGGGCCTGCAATTAAAACGACTCTATCCCGGTACGCCGGAATATCAG
CAATACCTGTCGGAGCAATG

Downstream 100 bases:

>100_bases
GTCATGCACGGCGAATCTCCAATCAAACGTCGCGAATCGCGCAAGATCTGGGTCGGTAACGTGCCCGTGGGCGGCGATGC
CCCTATCGCTGTGCAGAGCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKAAHPEVVAANRVNPGETLRQARESNGWSLAEVALKLNLTVTSLSNLEAGAFDKLPGHTFARGYIRAYAKLLGMDQTVL
VQQFDQSTGTDSQGSNVHALGRIEEPVRVSHTILRIVSLLLLIAVIGGGFVWWQDQTSQRTKDLIGLAPEHVEVEGADGT
TQIHPLDEPEDQAVAEGEAEGSTALALPQSESTAESTGAETDAAAPATAPVAPAPAAPAATPTAPAHTPAPVVAAPANPA
PAAPATPAPTVTAPAAPAVAAPAPTAPVAPAAGQGQVQVQFIADCWTQVTDGSGKVLYSGLKRKGDSLSVVGKPPFAVRL
GVARGAQVSYNGQPVDVAPFTSGETARLKLGQ

Sequences:

>Translated_352_residues
MKAAHPEVVAANRVNPGETLRQARESNGWSLAEVALKLNLTVTSLSNLEAGAFDKLPGHTFARGYIRAYAKLLGMDQTVL
VQQFDQSTGTDSQGSNVHALGRIEEPVRVSHTILRIVSLLLLIAVIGGGFVWWQDQTSQRTKDLIGLAPEHVEVEGADGT
TQIHPLDEPEDQAVAEGEAEGSTALALPQSESTAESTGAETDAAAPATAPVAPAPAAPAATPTAPAHTPAPVVAAPANPA
PAAPATPAPTVTAPAAPAVAAPAPTAPVAPAAGQGQVQVQFIADCWTQVTDGSGKVLYSGLKRKGDSLSVVGKPPFAVRL
GVARGAQVSYNGQPVDVAPFTSGETARLKLGQ
>Mature_352_residues
MKAAHPEVVAANRVNPGETLRQARESNGWSLAEVALKLNLTVTSLSNLEAGAFDKLPGHTFARGYIRAYAKLLGMDQTVL
VQQFDQSTGTDSQGSNVHALGRIEEPVRVSHTILRIVSLLLLIAVIGGGFVWWQDQTSQRTKDLIGLAPEHVEVEGADGT
TQIHPLDEPEDQAVAEGEAEGSTALALPQSESTAESTGAETDAAAPATAPVAPAPAAPAATPTAPAHTPAPVVAAPANPA
PAAPATPAPTVTAPAAPAVAAPAPTAPVAPAAGQGQVQVQFIADCWTQVTDGSGKVLYSGLKRKGDSLSVVGKPPFAVRL
GVARGAQVSYNGQPVDVAPFTSGETARLKLGQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=348, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 35978; Mature: 35978

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50943 HTH_CROC1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAHPEVVAANRVNPGETLRQARESNGWSLAEVALKLNLTVTSLSNLEAGAFDKLPGHT
CCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCH
FARGYIRAYAKLLGMDQTVLVQQFDQSTGTDSQGSNVHALGRIEEPVRVSHTILRIVSLL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
LLIAVIGGGFVWWQDQTSQRTKDLIGLAPEHVEVEGADGTTQIHPLDEPEDQAVAEGEAE
HHHHHHCCCEEEECCCHHHHHHHHHCCCCCCEEEECCCCCEEECCCCCCCHHHHHCCCCC
GSTALALPQSESTAESTGAETDAAAPATAPVAPAPAAPAATPTAPAHTPAPVVAAPANPA
CCEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
PAAPATPAPTVTAPAAPAVAAPAPTAPVAPAAGQGQVQVQFIADCWTQVTDGSGKVLYSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEHHH
LKRKGDSLSVVGKPPFAVRLGVARGAQVSYNGQPVDVAPFTSGETARLKLGQ
HHCCCCCEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCCEEEEECCC
>Mature Secondary Structure
MKAAHPEVVAANRVNPGETLRQARESNGWSLAEVALKLNLTVTSLSNLEAGAFDKLPGHT
CCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCH
FARGYIRAYAKLLGMDQTVLVQQFDQSTGTDSQGSNVHALGRIEEPVRVSHTILRIVSLL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
LLIAVIGGGFVWWQDQTSQRTKDLIGLAPEHVEVEGADGTTQIHPLDEPEDQAVAEGEAE
HHHHHHCCCEEEECCCHHHHHHHHHCCCCCCEEEECCCCCEEECCCCCCCHHHHHCCCCC
GSTALALPQSESTAESTGAETDAAAPATAPVAPAPAAPAATPTAPAHTPAPVVAAPANPA
CCEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
PAAPATPAPTVTAPAAPAVAAPAPTAPVAPAAGQGQVQVQFIADCWTQVTDGSGKVLYSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEHHH
LKRKGDSLSVVGKPPFAVRLGVARGAQVSYNGQPVDVAPFTSGETARLKLGQ
HHCCCCCEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA