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The map label for this gene is ydiP [C]

Identifier: 77460698

GI number: 77460698

Start: 5048210

End: 5049106

Strand: Reverse

Name: ydiP [C]

Synonym: Pfl01_4477

Alternate gene names: 77460698

Gene position: 5049106-5048210 (Counterclockwise)

Preceding gene: 77460701

Following gene: 77460695

Centisome position: 78.42

GC content: 59.31

Gene sequence:

>897_bases
ATGAACAAGCCTGACCTGCCTTCGATTCCGGTGTTCAAGCTCTACGGTGAAAGCCTGGACTGGCCGACCCCTGACTTGCT
GCACTGTGAAACCATTTCCAAACGCAGCCGCGAACACCATTGGGAAATCAAACCCCACCGCCACGCCGATTTGTGCCAGT
TGCTCTTCGTATTCAAAGGTCAGGCAGAGCTTGAAATCGAAGGCCAACGCACGCAACTGAACGAAGCCGCGATCCAGATC
CTGCCGCCGTTATCGGTGCATGGATTCCGTTTTTCCGAGGACGTCGAAGGATTCGTCGTCACCCTCGCTACACCATTGAT
CAACCATTTGCAGGCGCAACTGGGCAGCGCGGTGCAGGCCCTGGCCCAGGCCGAGAGTTATCCGGCGGGCAAGGACGCGG
AGTACCTCAACAGTCTGTTTGCCGCGTTGCAGGCCGAGTACAACGGCCATCAACCGGCGCGGGAAATGCTCATGCATTCG
CTGGTCAGCGTGATCATGGTCTGGGTCAGCCGTCAGGCGATCCGCCGTCACAACGCCACGCAACGGCCGCAACGCCAGCG
CGAATACCTCAACGGATTCATTCAGCTGGTGGAAGAAACCTATCGCCAGCACGTCAAGGTCGAAGACCTGGCCCATCGCC
TGGGGATTTCCGTCTCGCACCTCAACGGCACCTGCCGTGAACTGGCGGGGCAGCCGGCGTTGCAGATCATGCACGAGCGT
CAATTGCTGGAAGCCAAGCGTCTGCTGACTTACACCAGCATGACGATTTACGAGATGTCCGAGGTGTTGGGGTTTTCCGA
TCCGACCAACTTCACGCGCCTGTTCCGGCGTCGGGTGGGGATCTCGCCAAAGGCGTTCCGCGACCGCTTGAAGGCCGAGC
AGAACGACGACGCCTGA

Upstream 100 bases:

>100_bases
TGCGGGTCTGTCAATTGAAGGTGAAAACTGAGCCGATACCTGTACATTCTGCCAATCGGTGCGATTATCGCCCGCAAACC
TCGAGGCCTGGATTGAAGTG

Downstream 100 bases:

>100_bases
CGTCCTGTGTTACCGCAGGGCGTTGAGGGTGGCGTTGTGAGGGATGCAGCGCTCGAAGTTGCAGCTCGCGTACTCACGGG
GCAGTTGCCGCAACTGCTCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; AraC-Type Transcription Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Pobr Arac Family Protein; Two Component Transcriptional Regulator; AraC Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; AraC-Type Transcriptional Regulator; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHHWEIKPHRHADLCQLLFVFKGQAELEIEGQRTQLNEAAIQI
LPPLSVHGFRFSEDVEGFVVTLATPLINHLQAQLGSAVQALAQAESYPAGKDAEYLNSLFAALQAEYNGHQPAREMLMHS
LVSVIMVWVSRQAIRRHNATQRPQRQREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHER
QLLEAKRLLTYTSMTIYEMSEVLGFSDPTNFTRLFRRRVGISPKAFRDRLKAEQNDDA

Sequences:

>Translated_298_residues
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHHWEIKPHRHADLCQLLFVFKGQAELEIEGQRTQLNEAAIQI
LPPLSVHGFRFSEDVEGFVVTLATPLINHLQAQLGSAVQALAQAESYPAGKDAEYLNSLFAALQAEYNGHQPAREMLMHS
LVSVIMVWVSRQAIRRHNATQRPQRQREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHER
QLLEAKRLLTYTSMTIYEMSEVLGFSDPTNFTRLFRRRVGISPKAFRDRLKAEQNDDA
>Mature_298_residues
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHHWEIKPHRHADLCQLLFVFKGQAELEIEGQRTQLNEAAIQI
LPPLSVHGFRFSEDVEGFVVTLATPLINHLQAQLGSAVQALAQAESYPAGKDAEYLNSLFAALQAEYNGHQPAREMLMHS
LVSVIMVWVSRQAIRRHNATQRPQRQREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHER
QLLEAKRLLTYTSMTIYEMSEVLGFSDPTNFTRLFRRRVGISPKAFRDRLKAEQNDDA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34124; Mature: 34124

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHHWEIKPHRHADLCQLLFVFKG
CCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
QAELEIEGQRTQLNEAAIQILPPLSVHGFRFSEDVEGFVVTLATPLINHLQAQLGSAVQA
CCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAQAESYPAGKDAEYLNSLFAALQAEYNGHQPAREMLMHSLVSVIMVWVSRQAIRRHNAT
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QRPQRQREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHER
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCHHHHHHCCCHHHHHHHHH
QLLEAKRLLTYTSMTIYEMSEVLGFSDPTNFTRLFRRRVGISPKAFRDRLKAEQNDDA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHHWEIKPHRHADLCQLLFVFKG
CCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
QAELEIEGQRTQLNEAAIQILPPLSVHGFRFSEDVEGFVVTLATPLINHLQAQLGSAVQA
CCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAQAESYPAGKDAEYLNSLFAALQAEYNGHQPAREMLMHSLVSVIMVWVSRQAIRRHNAT
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QRPQRQREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHER
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCHHHHHHCCCHHHHHHHHH
QLLEAKRLLTYTSMTIYEMSEVLGFSDPTNFTRLFRRRVGISPKAFRDRLKAEQNDDA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA